Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_J02
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.46
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.4
06_03_1310 + 29238644-29240260 31 1.4
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 1.9
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.3
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.6
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988... 28 7.6
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.6
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.6
09_02_0543 + 10427321-10428315,10428440-10429154 28 10.0
08_02_0813 + 21459776-21461128 28 10.0
01_06_1147 + 34892415-34893702,34894051-34894676 28 10.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 328 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 164
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 381 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 533
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>06_03_1310 + 29238644-29240260
Length = 538
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +1
Query: 622 PXXAXPPXRGEVXSSXGXXPXXSSRXPXXXHPXXAXRPXSPXXXPLXPPAAXRP-PXXP 795
P + PP SS G P SS P HP P +P PP P P P
Sbjct: 420 PKSSMPPSTSP-PSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPTTTPPGHHAPVPGTP 477
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 226 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 342
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 241 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 152
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 113 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 268
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_04_0260 +
23996775-23996865,23997031-23997566,23998407-23998892,
23998989-23999152,23999220-23999281,23999753-23999907,
24000625-24000738,24001701-24002233,24002512-24002609,
24003108-24003398,24003764-24003830,24003905-24003983
Length = 891
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 93 AALAIAQVRRNGNKNNISRRHFMTTDKEY 7
AA A A ++ GN+N +RR F ++KEY
Sbjct: 385 AAAADAAIKALGNENPQARRAFQLSEKEY 413
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 410 GRGERSPRRWLQPRLAVPRQASTSVPRTP 324
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 355 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 188
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Frame = +1
Query: 622 PXXAXPPXRGEVXSSXGXXPXXSSRXPXXXHPXXAXRPXSPXXX--PLXPPAAXRPPXXP 795
P PP SS P P P A P SP P PAA PP P
Sbjct: 41 PDMPPPPPTPAPQSSPAPPPAPDMTPPPGPGPAAAPSPHSPSPSNAPWVAPAADIPPPPP 100
>08_02_0813 + 21459776-21461128
Length = 450
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 299 GEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQ 478
G++ C WL + R P LL+ TT R V+ W K+ IS P+S++
Sbjct: 238 GDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSIE 289
Query: 479 L 481
L
Sbjct: 290 L 290
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 330 PRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 440
P N+ G + C LQP PGT S P T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,851,230
Number of Sequences: 37544
Number of extensions: 476728
Number of successful extensions: 1540
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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