Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_J02
(805 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 69 4e-14
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 65 6e-13
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 64 2e-12
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 64 2e-12
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 64 2e-12
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 62 4e-12
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 62 8e-12
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 61 1e-11
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 60 2e-11
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 60 2e-11
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 59 4e-11
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 58 7e-11
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 58 1e-10
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 57 2e-10
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 57 2e-10
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 57 2e-10
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 56 3e-10
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 54 1e-09
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 54 2e-09
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 53 3e-09
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 52 5e-09
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 50 3e-08
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 47 2e-07
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 46 3e-07
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 45 7e-07
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 42 9e-06
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 38 1e-04
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 37 3e-04
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 36 6e-04
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 36 6e-04
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 36 6e-04
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 35 8e-04
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 31 0.017
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 31 0.017
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 28 0.088
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.7
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 69.3 bits (162), Expect = 4e-14
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Frame = +2
Query: 80 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 238
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 239 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RAR 412
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 413 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDFRD*QKNI 580
+ G V W + + + +P D QTC KFGS ++ +D + +N+
Sbjct: 127 LHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQIDLKHINQNM 182
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 65.3 bits (152), Expect = 6e-13
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Frame = +2
Query: 98 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 256
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 257 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 430
++ +W D +L W+ E+G L V S+ +WRPD+VL N A A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 431 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDFR 562
V W + + ++ +P D QTC KFGS ++ +D R
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLR 180
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 63.7 bits (148), Expect = 2e-12
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Frame = +2
Query: 104 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 271
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 272 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAT---TAGDYALRARVSNNGSVSWI 442
+D+RL++ G+ + + R+W+PD N + T R+ +G V +
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYS 121
Query: 443 KRLDISTPISMQLDNWPNDMQTCTFKFGS 529
RL I M L+N+P D Q C +FGS
Sbjct: 122 SRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 63.7 bits (148), Expect = 2e-12
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Frame = +2
Query: 125 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 289
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 290 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDIST 463
W E+G L V S+ +WRPD+VL N A A +A + + G V W +
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKS 151
Query: 464 PISMQLDNWPNDMQTCTFKFGSRMHNTDXMDFR 562
+ ++ +P D QTC KFGS ++ +D R
Sbjct: 152 SCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLR 184
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 63.7 bits (148), Expect = 2e-12
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Frame = +2
Query: 125 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 289
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 290 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLD 454
WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNAD---GNYEVTLMTKATLKYTGDVSWKPPAI 153
Query: 455 ISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDFR 562
+ + ++ +P D Q+C KFGS +N +D +
Sbjct: 154 YKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVDLK 189
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 62.5 bits (145), Expect = 4e-12
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Frame = +2
Query: 71 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 229
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 230 ESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYAL- 403
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y +
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNAD---GNYEVT 120
Query: 404 ---RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDFR 562
+A + + G V W + + ++ +P D QTC KFGS ++ +D R
Sbjct: 121 IMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYTVDLR 176
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 61.7 bits (143), Expect = 8e-12
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Frame = +2
Query: 176 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 349
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 350 PDVVLLNAAATTAGDYALRAR----VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTF 517
PD+VL N A G+Y +R + + NG V W+ + ++ + +P D QTC
Sbjct: 111 PDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167
Query: 518 KFGSRMHNTD 547
KFGS N D
Sbjct: 168 KFGSWTFNGD 177
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 61.3 bits (142), Expect = 1e-11
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Frame = +2
Query: 125 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 289
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 290 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLD 454
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNAD---GNYEVTLMTKATVYYSGLVVWQPPAV 148
Query: 455 ISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDFR 562
+ S+ ++ +P D+QTC K GS ++ +D R
Sbjct: 149 YKSSCSIDVEFFPYDVQTCVLKLGSWTYDGFKVDLR 184
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 60.1 bits (139), Expect = 2e-11
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Frame = +2
Query: 125 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 289
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 290 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDIST 463
WN E+G L ++ +LW+PD+++ N+A G Y V++NGS ++ +
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKS 177
Query: 464 PISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
+ + +P D Q C KFGS ++ + +D
Sbjct: 178 TCKIDITWFPFDDQHCDMKFGSWTYDGNQVD 208
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 60.1 bits (139), Expect = 2e-11
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Frame = +2
Query: 125 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 289
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 290 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDIST 463
WN E+G L ++ +LW+PD+++ N+A G Y V++NGS ++ +
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKS 177
Query: 464 PISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
+ + +P D Q C KFGS ++ + +D
Sbjct: 178 TCKIDITWFPFDDQHCDMKFGSWTYDGNQVD 208
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 59.3 bits (137), Expect = 4e-11
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 388
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 389 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
G Y V++NGS ++ + + + +P D Q C KFGS ++ + +D
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVD 140
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 58.4 bits (135), Expect = 7e-11
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 389 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
G Y V+++GS ++ + M + +P D Q C KFGS ++ + +D
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGSWTYDGNQVD 140
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 58.0 bits (134), Expect = 1e-10
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 389 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
G Y V+++GS ++ + M + +P D Q C KFGS ++ + +D
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGSWTYDGNQVD 140
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 57.2 bits (132), Expect = 2e-10
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 389 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
G Y V+++GS ++ + + + +P D Q C KFGS ++ + +D
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVD 140
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 56.8 bits (131), Expect = 2e-10
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 389 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
G Y V+++GS ++ + + + +P D Q C KFGS ++ + +D
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVD 140
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 56.8 bits (131), Expect = 2e-10
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 389 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
G Y V+++GS ++ + + + +P D Q C KFGS ++ + +D
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVD 140
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 56.4 bits (130), Expect = 3e-10
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Frame = +2
Query: 77 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 241
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 242 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARV 415
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 416 SNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDFR 562
NNG+ ++ + + + +P D Q C KFGS ++ +D +
Sbjct: 131 KNNGTCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQ 179
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 54.4 bits (125), Expect = 1e-09
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 8/160 (5%)
Frame = +2
Query: 101 ENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHL--RHANIRESESTVRILADLQMN 268
++ T+L + L YD P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 269 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVS 436
W D LSW ++ G + V S+ +W PD+ + N+ T G V ++GSVS
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVS 158
Query: 437 WIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMD 556
+ + + +WP D C FGS +H+ + ++
Sbjct: 159 CVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEEVN 198
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 53.6 bits (123), Expect = 2e-09
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Frame = +2
Query: 98 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 262
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 263 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL--LNAAATTAGDYALRARVSNNGSV 433
+ W L+W + E+ ++ V S +W PD+V+ + + ++ V N+G++
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLEMPSVECIVFNSGTI 147
Query: 434 SWIKRLDISTPISMQLDN--WPNDMQTCTFKFGSRMHNTD 547
+ TP+ + D+ WP D+ CT S H ++
Sbjct: 148 LCVP-FTTYTPV-CEYDHTWWPYDILNCTIHIASWSHGSN 185
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 53.2 bits (122), Expect = 3e-09
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = +2
Query: 179 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 355
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 356 VVLLNAAATTAGDYALRARV--SNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 529
+L N A + V S+ G V W+ + + ++ +P D Q C K+ S
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWAS 151
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 52.4 bits (120), Expect = 5e-09
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Frame = +2
Query: 113 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 277
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 278 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKR 448
RLS+ S + ER+WRPD N + + R+S +G + + R
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 449 LDISTPISMQLDNWPNDMQTCTFKFGS 529
L I M+L N+P D Q+C GS
Sbjct: 156 LTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 50.0 bits (114), Expect = 3e-08
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Frame = +2
Query: 125 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 283
++D++L YD E+ D +V + L +R A I + + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 284 LSWN--AGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKR 448
L +N G T L + R+W PD+ N + + R+ NGSV + R
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIR 153
Query: 449 LDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDF 559
+ ++ M L +P D Q C+ + S TD + F
Sbjct: 154 ISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVF 190
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 47.2 bits (107), Expect = 2e-07
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Frame = +2
Query: 125 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 283
++D++L YD E+ D VV + + +R + I + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 284 LSWN--AGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKR 448
L +N G T L + R+W PD+ N + + R+ NGSV + R
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIR 153
Query: 449 LDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDF 559
+ ++ M L +P D Q C+ + S TD + F
Sbjct: 154 ISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVF 190
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 46.4 bits (105), Expect = 3e-07
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Frame = +2
Query: 104 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 271
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 272 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNN 424
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHS 123
Query: 425 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 529
GS++ RL I+ M L +P D Q C + S
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 45.2 bits (102), Expect = 7e-07
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Frame = +2
Query: 104 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 271
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 272 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNN 424
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHS 123
Query: 425 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 529
GS++ RL I+ M L +P D Q C + S
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 41.5 bits (93), Expect = 9e-06
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Frame = +2
Query: 128 IDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLSWN 295
I +L YD P+ ++V + L + + I E I L W D+RL+++
Sbjct: 41 ISRILDGYDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDYTITMYLNQYWKDERLAFS 100
Query: 296 AGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTP 466
E + +E++W PD N + D R R+S +GSV++ R +
Sbjct: 101 QEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLA 160
Query: 467 ISMQLDNWPNDMQTCTFKFGS 529
M L +P D Q CT + S
Sbjct: 161 CMMDLHYYPLDSQNCTVEIES 181
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 37.5 bits (83), Expect = 1e-04
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +2
Query: 269 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSN 421
W D RL++ G T V SE +W PD +N ATT+ ++ R+ +
Sbjct: 6 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 61
Query: 422 NGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 529
+GS++ RL I+ M L +P D Q C + S
Sbjct: 62 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 97
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 36.7 bits (81), Expect = 3e-04
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Frame = +2
Query: 101 ENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE----SESTVRILAD--LQ 262
E++ SL ++ YD+ P K + T+ H + +E ++ +AD L
Sbjct: 1 ESSLSLKDILPLNPKLYDKHRAP--KFLGQPTIVYFHVTVLSIDSINEESMTYVADIFLA 58
Query: 263 MNWIDKRLSW--NAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRAR---VSNNG 427
+W D RL N E + +WRPD NA T + ++ + ++
Sbjct: 59 QSWRDSRLRLPENMSEDYRILDVDWLHNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDK 118
Query: 428 SVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNTDXMDF 559
++ ++ +L + +M+ +++P+D Q C+ S H T + F
Sbjct: 119 TLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVF 162
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 35.5 bits (78), Expect = 6e-04
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Frame = +2
Query: 101 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 265
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 266 NWIDKRLSW-NAGEWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVS 436
W D RL + N ++ + + +W PD ++ R+ NG+V+
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVN 175
Query: 437 WIKRLDISTPISMQLDNWPNDMQTCTFKFGS 529
++ R + +L+ +P D C+F S
Sbjct: 176 YLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 35.5 bits (78), Expect = 6e-04
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Frame = +2
Query: 101 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 265
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 266 NWIDKRLSW-NAGEWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVS 436
W D RL + N ++ + + +W PD ++ R+ NG+V+
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVN 175
Query: 437 WIKRLDISTPISMQLDNWPNDMQTCTFKFGS 529
++ R + +L+ +P D C+F S
Sbjct: 176 YLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 35.5 bits (78), Expect = 6e-04
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Frame = +2
Query: 101 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 265
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 266 NWIDKRLSW-NAGEWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVS 436
W D RL + N ++ + + +W PD ++ R+ NG+V+
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVN 175
Query: 437 WIKRLDISTPISMQLDNWPNDMQTCTFKFGS 529
++ R + +L+ +P D C+F S
Sbjct: 176 YLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 35.1 bits (77), Expect = 8e-04
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 335 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 505
+ +WRPD NA + T + + + ++ ++ +L + +M +P+D Q
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 506 TCTFKFGSRMHNTDXMDFR 562
C + S H TD M F+
Sbjct: 176 ECKLQMESLSHTTDEMIFQ 194
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.017
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 341 LWRPDVVLLN--AAATTAGDYA-LRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 511
+W P V + N ++A T + + + +G V RL + ++L+ +P D+Q C
Sbjct: 97 IWTPTVYVSNEPSSAITGNNVKDVLVSIDPSGMVRLNTRLQATLNCGLRLEKFPFDVQEC 156
Query: 512 TFKFGSRMHN 541
F S HN
Sbjct: 157 PLIFESWTHN 166
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 30.7 bits (66), Expect = 0.017
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = +2
Query: 179 IVVNLT-LHLRHANIRESESTVRILADLQMNWIDKRLSW-NAGEWGCSTWLVSSERLWRP 352
+ VN++ L L A+ ES + LQ W D RL + N ++ + + +W P
Sbjct: 137 LTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLP 196
Query: 353 DV--VLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFG 526
D ++ R+ NG+V+++ R + +L+ +P D C+F
Sbjct: 197 DTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIE 256
Query: 527 S 529
S
Sbjct: 257 S 257
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 28.3 bits (60), Expect = 0.088
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Frame = +2
Query: 179 IVVNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 340
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 341 LWRPDVVLLNAAATTAGDYALRARVSN-----NGSVSWIKRLDISTPISMQLDNWPNDMQ 505
LW+PD LNA + AL + S+ N +V + R+ M+ +P D+Q
Sbjct: 71 LWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQ 128
Query: 506 TCTFKFGSRMHNTDXMDFR 562
C S ++ + R
Sbjct: 129 ICPIYIESFSYHKQKLRLR 147
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 322 PSAAAPFPCVPTQS 281
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,920
Number of Sequences: 438
Number of extensions: 4625
Number of successful extensions: 93
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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