Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_I24
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    31   1.0  
06_03_0854 + 25400855-25403741,25406174-25407708                       31   1.4  
03_04_0006 + 16257288-16259522                                         30   1.8  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.4  
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550...    28   7.4  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   9.7  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   9.7  
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485...    28   9.7  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 330  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 476
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 537 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPAPLAVVS 412
           AKR+PT  T    P  AR  +++   +F   +P PAP +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 537 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPAPLAVVSLDSR*GQWE 385
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 354 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 253
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>04_01_0416 -
           5504415-5504590,5509032-5509116,5509190-5509322,
           5509426-5510312
          Length = 426

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 510 PLMSPYNARLESSSTGSSFPADSPKPAPLAVVSLDS 403
           PL+ P  AR   SSTGSSFP  S  P    ++ L S
Sbjct: 47  PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 135 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 263
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 135 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 263
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


>01_05_0635 -
           23847255-23847287,23847397-23848083,23848178-23848540,
           23848633-23848725,23848820-23848870,23849031-23849304,
           23849766-23850595
          Length = 776

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -1

Query: 643 LNEHRAPADIIDRAPLPPNRVSNETMKVVVFQRRS----RETISH 521
           L E+ AP +  +RAP PP     ++  VVVF R++    +E +SH
Sbjct: 111 LRENMAPPE--ERAPPPPPAPPPKSSHVVVFSRQADPTEKENVSH 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,252,134
Number of Sequences: 37544
Number of extensions: 453079
Number of successful extensions: 1415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)