Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_I23
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 176 3e-45
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 171 9e-44
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.98
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 27 3.0
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.1
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 25 9.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 176 bits (429), Expect = 3e-45
Identities = 80/121 (66%), Positives = 98/121 (80%)
Frame = +2
Query: 173 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 352
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 353 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 532
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 533 P 535
P
Sbjct: 130 P 130
Score = 65.7 bits (153), Expect = 7e-12
Identities = 31/49 (63%), Positives = 36/49 (73%)
Frame = +3
Query: 543 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWVVV 689
D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W ++
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 682 WLLAREVLXLRGVLPRDQRWDVVVDLSFYRD 774
+LLAREVL LRG + R W+V+ DL FYRD
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 171 bits (416), Expect = 9e-44
Identities = 75/125 (60%), Positives = 99/125 (79%)
Frame = +2
Query: 161 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 340
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 341 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 520
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 521 IVLDP 535
+V DP
Sbjct: 125 VVTDP 129
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +3
Query: 543 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWVVV 689
D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W ++
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 682 WLLAREVLXLRGVLPRDQRWDVVVDLSFYRD 774
+LLAREVL +RG L R WDV+ DL FYRD
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.98
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 296 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 472
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 558 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 668
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 561 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 656
EA ++P I + +TD+ R V IP N S
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.1
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -2
Query: 380 RTHQRGSRWLRQHEQPEQVFPRYDA 306
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 532 VQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DDEHISGVLDG 353
++ E F + +S + W T + + G+RG ++ EGP D H SGV G
Sbjct: 176 IRAEAEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SADLH-SGVFGG 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,528,993
Number of Sequences: 5004
Number of extensions: 77943
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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