Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_I21
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   147   2e-36
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   142   5e-35
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.011
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    28   1.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   9.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.0  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  147 bits (356), Expect = 2e-36
 Identities = 66/99 (66%), Positives = 82/99 (82%)
 Frame = +3

Query: 81  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 260
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 261 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTP 377
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTP
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTP 108


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  142 bits (344), Expect = 5e-35
 Identities = 62/103 (60%), Positives = 83/103 (80%)
 Frame = +3

Query: 69  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 248
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 249 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTP 377
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTP
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTP 107


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 581 VXAPXXLXAXGGGPPPXTPXGXXGGKXXPPPRXPXXXXGGG 703
           +  P      GG PPP  P G  G    PPP  P     GG
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.5 bits (63), Expect = 0.55
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 666 GXXXPPKXPXGVXGGGPPP 610
           G   PP  P GV G GPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 702 PPPXXXXGXRGGGXXXPPKXPXGVXGGG 619
           PPP    G  G G   PP  P  V  GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/59 (23%), Positives = 19/59 (32%)
 Frame = -1

Query: 702 PPPXXXXGXRGGGXXXPPKXPXGVXGGGPPPXAXKXXGAXTPPXXPXGXGXLXXXGNQF 526
           PPP             P   P  + GG PPP          PP  P     +   G+++
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
 Frame = +3

Query: 621 PPXXPPXXXXGXXXXXP-PXPPXKXXXGG---XXXPPXXXGXGXPP 746
           PP  PP          P P PP     GG      PP   G G PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 204 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAH 341
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVH 134


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -1

Query: 288 RTHQRGSRWLRQHEQPEQVFPRYDA 214
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +3

Query: 606 PXGGXPPXXPPXXXXGXXXXXPPXPP 683
           P G  PP  PP          PP PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,541
Number of Sequences: 5004
Number of extensions: 53098
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)