Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_I10
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.5  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    26   7.6  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    26   7.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   7.6  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 433 TSVDVQEESRRLPVGMAVYTLIQ*GHKAVVDASA*TEA 546
           + VDV+ E++ +P G+  Y + + G K +VDA   TEA
Sbjct: 139 SQVDVRVEAK-IPGGVDTYAIDENGQKHIVDARMWTEA 175


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 382 TIHSNELGLDVHPGQQCVLLRLRHTCEPTN--WLGARSWSMRCPRC 251
           T+H + L L+    + C  ++   +   T+  W G + W   C +C
Sbjct: 6   TLHLDRLSLETPSERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKC 51


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 35  LALPDLTVAVPSAAIVHPVTHGTIRHD 115
           L LPD+ +A PS  +VH V  G +  D
Sbjct: 138 LDLPDIVIATPSRCVVH-VASGVLPLD 163


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 349 GHPDLIHCCVSSHYADQTA 405
           G P+ IHC V   + D+TA
Sbjct: 249 GFPEFIHCLVDMGFLDETA 267


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -1

Query: 637 PPCRHGSLHIGSVQNSP--LQPGAQAH---VPFVHVPPFMQMRR 521
           PP  + S H+ S  N P  + P   AH   +P   VPP   + R
Sbjct: 109 PPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSASVSR 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,722
Number of Sequences: 5004
Number of extensions: 67759
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)