Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_I08
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.5  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   7.3  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   9.6  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 4   WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
           W D+F  + +P+  ++A  IPSL  A   SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 472 GGPXXXPPXGXXGXGFLGGXGGXG 401
           GG    PP G  G G  GG GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/55 (29%), Positives = 16/55 (29%)
 Frame = -3

Query: 564 GGXXXXXGGPPPXXXXXGXXGGXXXXXXXXXGXPXXXPXXXXXGXXFWGXGGGXG 400
           GG     GGPPP     G  GG         G                G GGG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 402 PXP-PXPPKXPXPXXPXGGXXXGPPXXXXXXXGXPPXXP 515
           P P P P   P P    GG    PP       G PP  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 213 IFPGTVSSTFDHPFFNAW 266
           + P    +TFDHP F  W
Sbjct: 416 VHPENAKNTFDHPAFTNW 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.140    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,619
Number of Sequences: 5004
Number of extensions: 26339
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)