Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_I05
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   143   2e-36
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   143   2e-36
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  143 bits (347), Expect = 2e-36
 Identities = 70/114 (61%), Positives = 80/114 (70%)
 Frame = +1

Query: 439 RGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGC*QEDAVLALLRW*SGLRWCRR 618
           +G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG  +    L              
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAG 126

Query: 619 SHLSVLRVPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYXXFG 780
           +       PLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLY  FG
Sbjct: 127 ATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score =  140 bits (339), Expect = 1e-35
 Identities = 89/203 (43%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
 Frame = +2

Query: 239 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYMGIVDAF 418
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRY G++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 419 VRIPKGAG-VSFHSGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVDKKTQFWRYFXXX 595
           VRIPK  G +S+  G                              GVDK TQF RYF   
Sbjct: 61  VRIPKEQGFLSYWRG--NLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGN 118

Query: 596 XXXXXXXXXTSLCFVYP-----STSHVPVSPPMSVREMXSVNSPVSETASARXXXXXXXX 760
                    TSLCFVYP     +     V      RE   + + +++   A         
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA-----DGIT 173

Query: 761 XXXXXXXXXXQGIIIYRASYFGF 829
                     QGIIIYRA+YFGF
Sbjct: 174 GLYRGFGVSVQGIIIYRAAYFGF 196



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = +1

Query: 631 VLRVPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDG 753
           ++  P D  R R+    G+   +  +    +C + I+K++G
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  143 bits (347), Expect = 2e-36
 Identities = 70/114 (61%), Positives = 80/114 (70%)
 Frame = +1

Query: 439 RGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGC*QEDAVLALLRW*SGLRWCRR 618
           +G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG  +    L              
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAG 126

Query: 619 SHLSVLRVPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYXXFG 780
           +       PLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLY  FG
Sbjct: 127 ATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score =  140 bits (339), Expect = 1e-35
 Identities = 89/203 (43%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
 Frame = +2

Query: 239 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYMGIVDAF 418
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRY G++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 419 VRIPKGAG-VSFHSGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVDKKTQFWRYFXXX 595
           VRIPK  G +S+  G                              GVDK TQF RYF   
Sbjct: 61  VRIPKEQGFLSYWRG--NLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGN 118

Query: 596 XXXXXXXXXTSLCFVYP-----STSHVPVSPPMSVREMXSVNSPVSETASARXXXXXXXX 760
                    TSLCFVYP     +     V      RE   + + +++   A         
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA-----DGIT 173

Query: 761 XXXXXXXXXXQGIIIYRASYFGF 829
                     QGIIIYRA+YFGF
Sbjct: 174 GLYRGFGVSVQGIIIYRAAYFGF 196



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = +1

Query: 631 VLRVPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDG 753
           ++  P D  R R+    G+   +  +    +C + I+K++G
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 508 NFAFKDKYKQVFLGGC 555
           NF  KDK K+V + GC
Sbjct: 594 NFDIKDKNKKVNVAGC 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,302
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)