Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_H22
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   0.67 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect(2) = 0.67
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 594  PXPPPPPXXG 623
            P PPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 21.0 bits (42), Expect(2) = 0.67
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 582  WGXRPXPPPPP 614
            W  +  PPPPP
Sbjct: 1350 WRQQQPPPPPP 1360


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 594 PXPPPPPXXG 623
           P PPPPP  G
Sbjct: 374 PLPPPPPIRG 383


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 591 RPXPPPPP 614
           +P PPPPP
Sbjct: 340 KPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,694
Number of Sequences: 438
Number of extensions: 1213
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)