Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_H21
         (1046 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.37 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.37
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 508  PPPPPPPP 531
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.8 bits (54), Expect = 0.64
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 415  PPPPPPPXXGXKF 453
            PPPPPPP  G  +
Sbjct: 1356 PPPPPPPSSGQAY 1368



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 511  PPPPPPPXXXG 543
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect(2) = 0.43
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 415  PPPPPPP 435
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 573  PPPPPPXGGG 602
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 514  PPPPPPXXXGG 546
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 20.6 bits (41), Expect(2) = 0.43
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 469  PPPPPXGGXXF 501
            PPPPP  G  +
Sbjct: 1358 PPPPPSSGQAY 1368


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 509 PPPPPPPPXXXG 544
           P PPPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 573 PPPPPPXGGG 602
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 415 PPPPPPPXXG 444
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 415 PPPPPPPXXGXKFFF 459
           P PPPPP  G ++ F
Sbjct: 374 PLPPPPPIRGGEWTF 388


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 509  PPPPPPPP 532
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 406  GGXPPPPPPP 435
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 409 GXPPPPPPPXXGXKFFFXXXPPPPPXGGXXFXXPPPPPPP 528
           G P P P P    +      PP P  G      PPP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQG------PPPGGPP 52


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 2   WXYPGGXRGKFPSEXPPGFGAPTWGNKXKIFXQLKPKVPP 121
           + YP G  G FPS  P    +P           L+P+V P
Sbjct: 382 YGYPIGSGGSFPSLYPMATTSP---QSQSTIQTLRPQVSP 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,326
Number of Sequences: 438
Number of extensions: 13590
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34824789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)