Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_H18
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438...    33   0.38 
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    31   1.1  
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    31   1.5  
11_06_0419 + 23324772-23325035,23325200-23325214                       29   4.6  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.1  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   6.1  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.1  
07_01_0685 - 5177340-5177363,5177770-5177865,5177991-5178053,517...    28   8.1  

>06_01_0606 -
           4382133-4382704,4383017-4383336,4384152-4384258,
           4384339-4384512,4384956-4385204,4386831-4386986
          Length = 525

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 77  QFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPVLQNRSQPD 214
           Q+LL  A    A   +  SL   +DSL     +D+PPV Q + +P+
Sbjct: 413 QYLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 347 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVRGGS 177
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+ GGS
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGI-GGS 62


>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = +1

Query: 307 VGTQGSGAAALGWCPRNACGGLTFVLLNAAATTAGDYALRARVSNXGSVSWIKRLDISTP 486
           +GT   G  AL    RN C  L  VL+N  AT+     ++  +S    +S   R+ I++ 
Sbjct: 163 LGTSFGGCIALAVAARNPCIDLVLVLVN-PATSFEKSDIKQLLSVSSPLSDRARIAITSL 221

Query: 487 ISMQLDNWPXDMQTCXFKXG 546
           ++  +DN   DM     K G
Sbjct: 222 LNYNIDN-EVDMALSSMKSG 240


>11_06_0419 + 23324772-23325035,23325200-23325214
          Length = 92

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 319 GSGAAALGWCPRNACGGLTFVLLNAAATTAGDYALR 426
           G G     WC R   GG+  V  NAA T  G   +R
Sbjct: 16  GGGGGGWRWCGRGGGGGIAKVQPNAADTLRGGSTVR 51


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 245 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 361
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 299 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 120
           ++  +H   C+    G G+ N+S+  +    D +    G SPD  L G   +   ++ R 
Sbjct: 6   YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 119 RILPH 105
            I PH
Sbjct: 65  EIYPH 69


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 251 VHRANTGRSSNELDRQTTELERRGVG 328
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>07_01_0685 -
           5177340-5177363,5177770-5177865,5177991-5178053,
           5178138-5178232,5178941-5179028,5179372-5179444,
           5179866-5179920,5180355-5180463
          Length = 200

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 668 GPWPWXEXXGGA 703
           GPWPW E  GGA
Sbjct: 2   GPWPWGELGGGA 13


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,865,158
Number of Sequences: 37544
Number of extensions: 489038
Number of successful extensions: 1380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)