Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_H18
(842 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 4e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 35 0.001
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 34 0.002
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 33 0.002
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 33 0.002
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.003
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.006
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 31 0.010
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 29 0.041
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 28 0.12
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 28 0.12
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 28 0.12
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 26 0.50
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 25 1.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.7
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 22 8.1
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
Score = 21.8 bits (44), Expect = 8.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 409 GDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
G Y V++ GS ++ + M + +P D Q C K G
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFG 130
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 141
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 141
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 4e-04
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 204 VNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 377
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD+
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDI 120
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 198 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 374
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Score = 23.8 bits (49), Expect = 2.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 433 VSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFK 540
VS+ G V W+ + + ++ +P D Q C K
Sbjct: 113 VSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLK 148
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 34.7 bits (76), Expect = 0.001
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 198 IVVNLTLHLRHA---NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 365
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 366 RPDV 377
PD+
Sbjct: 104 LPDI 107
Score = 23.8 bits (49), Expect = 2.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = +1
Query: 445 GSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
G V W + + + +P D QTC K G
Sbjct: 131 GKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFG 164
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 34.3 bits (75), Expect = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 276 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDV 377
++ +W D +L W+ E+G L V S+ +WRPD+
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDI 111
Score = 26.6 bits (56), Expect = 0.29
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 418 ALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
A +A ++ G V W + + ++ +P D QTC K G
Sbjct: 126 ATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFG 168
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.9 bits (74), Expect = 0.002
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 195 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 368
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 369 PDV 377
PD+
Sbjct: 113 PDI 115
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 424 RARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
+A V G V W + S+ ++ +P D+QTC K G
Sbjct: 132 KATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVLKLG 172
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.9 bits (74), Expect = 0.002
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 195 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 368
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 369 PDV 377
PD+
Sbjct: 113 PDI 115
Score = 27.1 bits (57), Expect = 0.22
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 418 ALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
A +A + + G V W + + ++ +P D QTC K G
Sbjct: 130 ATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFG 172
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 33.9 bits (74), Expect = 0.002
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 165 RTIGTPPPYSKIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCST 338
R +G + + L L L N++ T + ++ W D +L WN ++ G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 339 WLVSSERLWRPDV 377
V SE +W PD+
Sbjct: 95 LHVPSEHIWLPDI 107
Score = 23.4 bits (48), Expect = 2.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 424 RARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
+A + + G V W + + ++ +P D QTC K G
Sbjct: 124 KAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFG 164
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 33.5 bits (73), Expect = 0.002
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 QRTIGTPPPYSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTW 341
+R +G + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 342 L-VSSERLWRPDV 377
L + RLW+PDV
Sbjct: 98 LRIPPHRLWKPDV 110
Score = 21.8 bits (44), Expect = 8.1
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = +1
Query: 409 GDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
G Y V N G+ ++ + + + +P D Q C K G
Sbjct: 122 GTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFG 167
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.5 bits (73), Expect = 0.002
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 276 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDV 377
++ W D +L WN E+G L V SE +W PD+
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDI 120
Score = 25.4 bits (53), Expect = 0.66
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 424 RARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
+A + G VSW + + ++ +P D Q+C K G
Sbjct: 137 KATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFG 177
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 33.1 bits (72), Expect = 0.003
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 430 RVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXGF*GCXXV 567
R+S G + + RL I M+L N+P D Q+C G C V
Sbjct: 143 RISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSCKCIYV 188
Score = 27.1 bits (57), Expect = 0.22
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 237 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 374
+ E + + + +W D RLS+ S + ER+WRPD
Sbjct: 76 VSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPD 121
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.1 bits (72), Expect = 0.003
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 195 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 368
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 369 PDV 377
PD+
Sbjct: 111 PDI 113
Score = 25.8 bits (54), Expect = 0.50
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 445 GSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
G V W+ + ++ + +P D QTC K G
Sbjct: 137 GDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFG 170
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.006
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 237 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 374
I E + T + + +W+D+RL++ G+ + + R+W+PD
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPD 89
Score = 30.3 bits (65), Expect = 0.023
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 430 RVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
R+ G V + RL I M L+N+P D Q C + G
Sbjct: 111 RLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFG 149
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 31.5 bits (68), Expect = 0.010
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 195 KIVVNLTLHL--RHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 365
+I N+T+ L + + S + + + + + W D LSW ++ G + V S+ +W
Sbjct: 66 QIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIW 125
Query: 366 RPDVRTAKRG 395
PD+ G
Sbjct: 126 VPDISVYNSG 135
Score = 23.0 bits (47), Expect = 3.5
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = +1
Query: 433 VSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFKXG 546
V + GSVS + + + +WP D C G
Sbjct: 151 VFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFG 188
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.5 bits (63), Expect = 0.041
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 201 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN--AGEWGCSTWLVSSERLWRP 371
+V + L +R A I + + +Q + W+D+RL +N G T L + R+W P
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 372 DV 377
D+
Sbjct: 119 DL 120
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 430 RVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFK 540
R+ GSV + R+ ++ M L +P D Q C +
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLR 177
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.9 bits (59), Expect = 0.12
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 397 ATTAGDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTC 531
ATT+ ++ R+ + GS++ RL I+ M L +P D Q C
Sbjct: 111 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 152
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.9 bits (59), Expect = 0.12
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 397 ATTAGDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTC 531
ATT+ ++ R+ + GS++ RL I+ M L +P D Q C
Sbjct: 111 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 152
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 27.9 bits (59), Expect = 0.12
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 397 ATTAGDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTC 531
ATT+ ++ R+ + GS++ RL I+ M L +P D Q C
Sbjct: 50 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 91
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 25.8 bits (54), Expect = 0.50
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 430 RVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTC 531
R+S GSV++ R + M L +P D Q C
Sbjct: 142 RLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNC 175
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 430 RVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTCXFK 540
R+ GSV + R+ ++ M L +P D Q C +
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLR 177
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 341 PSAAAPLPCVPTQS 300
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 21.8 bits (44), Expect = 8.1
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 195 WSTGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNW*QE*YK-SSTFYDN 37
+S GG + + + + AF+HS L I + + W + Y+ YDN
Sbjct: 1 FSLGGLGSGFANSVKELRNLAQQAFAHSNQLIIDKSLKGWKEVEYEVVRDAYDN 54
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,307
Number of Sequences: 438
Number of extensions: 4406
Number of successful extensions: 70
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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