Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_H10
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0720 + 20394898-20395284,20396062-20396202,20396304-203966...    29   4.7  
05_06_0145 + 25979792-25980415                                         29   4.7  
06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648,146...    29   6.2  
05_04_0002 + 17031662-17032264                                         28   8.2  

>08_02_0720 +
           20394898-20395284,20396062-20396202,20396304-20396669,
           20397146-20397388,20397474-20397566,20397892-20398077,
           20398259-20398471
          Length = 542

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = +3

Query: 150 TNISSVLRNKTRGTTMANALLCSALLTACVVSAQVHTAVETEMFAIPISPNLFNWTYQEF 329
           T+ SS        TT   A L  ALL     SAQ  T ++  +FA   +P    W Y   
Sbjct: 101 THSSSAAAAGRNATTAGAAALGGALLRLKTASAQSWTCMDLYVFA---TPYRIGWDYYIT 157

Query: 330 DQQYRFHASLLGKP 371
            Q++ F      +P
Sbjct: 158 AQEHTFEIKAWEEP 171


>05_06_0145 + 25979792-25980415
          Length = 207

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 235 HAVSKAEHSSAFAIVVPRVLFLNTD 161
           HAVS A  S   +I VPRV+F+  D
Sbjct: 59  HAVSSASSSGHISITVPRVIFVADD 83


>06_01_0187 +
           1458802-1458895,1459004-1459464,1459551-1459648,
           1460918-1461487,1461534-1461822,1461904-1462086,
           1462204-1462824
          Length = 771

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 219 ALLTACVVSAQVHTAVETEMFAIPISPNLFNWTYQEF-DQQYRFHASLLGK-PELPQW 386
           A LTA VV   +     T+ F  P+S  ++  +   F D++   H  L+ +  ++P+W
Sbjct: 393 ACLTATVVHVLLFHGRYTDKFVTPVSSEIWQLSRSAFQDKKMDIHTKLMKRYKQVPEW 450


>05_04_0002 + 17031662-17032264
          Length = 200

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 92  TSNGRGVNERTDVAASLKRN*YFISIKEQDTGD--HNGKRTAVFGFANSVRGLRSGAYGR 265
           TS GR   +R D+A+SL    Y  S    D GD   NGK  A    A  +   R G   R
Sbjct: 88  TSPGRHHQDREDIASSLPVFVYSSSAAAPDVGDAGGNGKAAAAAECAVCIVEFRDGDRAR 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,259
Number of Sequences: 37544
Number of extensions: 360496
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)