Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_H04
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical ...    33   0.33 
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    33   0.33 
U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   1.3  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   1.3  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    30   1.8  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   3.1  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      29   3.1  
L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeo...    28   7.2  
AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene...    28   7.2  

>AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical
           protein E04A4.1 protein.
          Length = 333

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 540 PLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKXVRAGVKASGCHQRLHQRI 707
           P  +     +SSN  FH     DL   S+   NA L+  R G+KA   H  +   I
Sbjct: 8   PFQLLKLPQKSSNYVFHRMLVADLIGFSLTSKNAKLQTKRLGLKAEDVHLEIRSGI 63


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
            protein Y108G3AL.7 protein.
          Length = 1192

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 585  FHTPTTPDLTSISINPLNAVLKXVRAGVKASGCHQR 692
            F TP TP L+  +I  L+ VLK +RA    +G +QR
Sbjct: 1017 FFTPDTPRLSPSAIQDLDKVLKKIRAKTHYTGWNQR 1052


>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 46  PAASAIPSLVNAFSSSKPPQTD----NPSARSMDMQ 141
           P+AS  P LVN  S+ +PPQ       PSA+ + MQ
Sbjct: 475 PSASNSPLLVNLLSNQQPPQQQYMYPGPSAQGLSMQ 510


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
            K04G2.8b protein.
          Length = 1188

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 807  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 866

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 867  YLEPEPERRSHS 878


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
            K04G2.8a protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 357
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeobox
           protein 16 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 513 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 617
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


>AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene 16
           protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 513 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 617
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,015,290
Number of Sequences: 27780
Number of extensions: 369627
Number of successful extensions: 1128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)