Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_H02
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    30   0.34 
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   5.5  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   7.3  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   9.6  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   9.6  

>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -3

Query: 376 NNESSGFSATIARNDLPLMLHLSCLLTMPD*S-----QAQPGSSFPADSPKPVPLAVVSL 212
           N+E + F   I R D   +LH SC  T P        QA PG SF +++   +PL  ++L
Sbjct: 535 NSEEAEFGLPIKR-DYGSILHPSCSQTFPPYPGSQLLQATPGRSFSSNAEALLPLNYITL 593

Query: 211 DSR 203
            S+
Sbjct: 594 LSK 596


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 676 FSQSLCVXDIWIKPXFAXLLPREVSVLAE 590
           F   LCV D+WIK   A    R+  V  E
Sbjct: 410 FRNPLCVTDVWIKKATAFSKRRQSQVFEE 438


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 673 SQSLCVXDIWIKPXFAXLLPREVSVLAELALGHLRYSLTDV--PPQSNSP 530
           + S C+  + +KP     + RE+ +L  LA G    SL D+   P+S +P
Sbjct: 65  NNSKCIIKV-LKPVKYKKIKREIKILQNLAGGPNIISLLDIVRDPESKTP 113


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 47  GNLGDLPILIHDDYDLSH*RRWHDDPAMKIAKC 145
           G +  L +     Y++SH R+  + P+ KI+KC
Sbjct: 19  GEIKCLDVRAQSKYEISHLRKSVNIPSEKISKC 51


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 560 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 411
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,037
Number of Sequences: 5004
Number of extensions: 67311
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)