Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_H01
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 28 1.3
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 28 1.3
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 27 2.3
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 26 5.3
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 26 5.3
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 26 5.3
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po... 26 5.3
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 5.3
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 26 5.3
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 9.2
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 2 TGVKRVKSQDDLKNHDALKKEREWEDFEDAV 94
TG V SQ L N+D L E+ EDFE+ V
Sbjct: 3 TGETLVDSQKSLINNDTLLNEKLKEDFEENV 33
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 197 PLPAEYTQFKEFTHCMFPHILDTKYM 274
PLPAEY +F + FP D KY+
Sbjct: 183 PLPAEYEEFYKILCIYFPKNYDIKYI 208
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 183 IISSSLYLQNTPSSKSLHTACSHIS*TQNTCQVCLHL 293
II+S +YL N S S+H+ HIS +CQ + L
Sbjct: 22 IINSLVYLVNFISCPSIHSIPFHISTHLTSCQANISL 58
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 275 SSLPPFKDKVNSSILKHLLATLSAAPFSLP 364
S +PP + K +I++ L T ++APF +P
Sbjct: 83 SGMPPPQQKYCLAIVRQLKRTKNSAPFKVP 112
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 5.3
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +2
Query: 338 LSAAPFSLPKVVSDEGRGYSQLHEK-HHEAGYDAYVTGLCFLAMHSHLANMRGDDTTRFL 514
L+AA L D+ R +K HE + Y+ GL L + D +L
Sbjct: 709 LTAASLFLKSGNDDQARSALLEAKKIDHECAWVYYLNGLSLLQQGKEVEGYEQLDVAHYL 768
Query: 515 SITSPLIKPFLNKVFL 562
PLI L K L
Sbjct: 769 DPEDPLISTALAKCLL 784
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 176 TLNHFFQPLPAEYTQFKEFTHCMFPHILDTKYMSSLPP 289
T+ HF P + ++ ++F++ + L T+YM PP
Sbjct: 224 TVTHFVALAPFKNSKNEKFSYAFTLYPLTTEYMQPAPP 261
>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 293 KDKVNSSILKHLLATLSAAPFSLPKVVSD 379
K+K +SI +H + TL+ + SLPKV+++
Sbjct: 21 KEKSEASIKRHGVFTLALSGGSLPKVLAE 49
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 294 LNGGKLDMYF-VSKICGNMQCVNSLNWVYSAGKGWKK*FNVCITSS 160
L+GGK+ Y KIC + + +WVYS + K V +T++
Sbjct: 268 LSGGKMLKYLGFGKICDYLFGIFVASWVYSRHYLFSKILRVVVTNA 313
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 17 VKSQDDLKNHDALKKEREWEDFEDAVGFSKVARMISESEK 136
V+S D+L NH A+++ + E DA+ S + + +K
Sbjct: 22 VRSSDELLNHRAIQESEQIETAADALITSNIGHRSRQRKK 61
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 83 EDAVGFSKVARMISESEKLVVGHNMLLDVMHTLNHF 190
E+ G SK+AR++ +++L N+L D N+F
Sbjct: 271 ENENGLSKIARVLPFAKRLFSFKNLLQDASSISNNF 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,985
Number of Sequences: 5004
Number of extensions: 50449
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -