Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_H01
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical pr...    83   2e-16
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    31   0.92 
Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical
           protein K10C8.1 protein.
          Length = 566

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 12/195 (6%)
 Frame = +2

Query: 8   VKRVKSQDDLKNHDALKKEREWEDFEDAVGFSKVARMISESEKLVVGHNMLLDVMHTLNH 187
           VK + S D LK  D L++ R     E   G S + +++  + KLVVGHN LLD M+  ++
Sbjct: 233 VKNI-SDDYLKEKDNLERARA-RCSESVKGVSAILQVVHMTGKLVVGHNSLLDAMYMYHY 290

Query: 188 FFQPLPAEYTQFKEFTHCMFPHILDTKYMSSLPPFKDKVNSSILKHLLATLSAAPFSLPK 367
           FF  LPA Y  FK+  + +FP I+DTK ++    F+       L++L     +      K
Sbjct: 291 FFSHLPANYQMFKDKFNALFPRIMDTKLLAQALRFELPGVGDSLENLGDYFGSD--KSDK 348

Query: 368 VVSDEGRGY---------SQLHEKHHEAGYDAYVTGLCFLAMHSHLANMRGDDTTRFLS- 517
            V  E RG+          +    +H AG+D+YVTG  FL +     N R +     L  
Sbjct: 349 TVPPELRGFIEPWMNPLEDESENVYHNAGFDSYVTGEVFLKLAHIYINRRNNFKNEILDF 408

Query: 518 --ITSPLIKPFLNKV 556
             I   L  P LN++
Sbjct: 409 DRIYQYLEAPILNRL 423


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts homolog)
            family protein 6 protein.
          Length = 1186

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 172  AHIESFLPAFTCRIHPVQRVYT 237
            AHI S +PAF+ R+ P+ R++T
Sbjct: 982  AHIGSMVPAFSMRLTPIDRIFT 1003


>Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical
           protein H19N07.3 protein.
          Length = 168

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 230 FTHCMFPHILDTKYMSSLPPFKDKVNSSILKHLLATLSAAPFSLPK 367
           F  C++   L  K ++++ P K K  +S ++H++ +    P   PK
Sbjct: 100 FDECLYLEYLRLKTLTNVSPMKRKRTASTVEHVIRSDDIKPILAPK 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,916
Number of Sequences: 27780
Number of extensions: 297361
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)