Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_G19
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 260 1e-70
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 148 8e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 145 5e-36
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 122 8e-29
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 79 5e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 77 2e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 3e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 51 2e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.33
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 29 0.57
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 7.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.3
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 260 bits (638), Expect = 1e-70
Identities = 125/159 (78%), Positives = 130/159 (81%)
Frame = +1
Query: 217 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 396
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 397 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 576
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 577 GVSHTVPXYXGXHSPTPSCVWTXPVXNLXXYLMXILXXR 693
GV+HTVP Y G P +L YLM IL R
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMER 196
Score = 86.6 bits (205), Expect = 4e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 108 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 230
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 148 bits (359), Expect = 8e-37
Identities = 68/132 (51%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Frame = +1
Query: 232 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 408
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 409 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 588
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 589 TVPXYXGXHSPT 624
+VP Y G P+
Sbjct: 167 SVPIYDGFSIPS 178
Score = 52.4 bits (120), Expect = 7e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 227
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 145 bits (352), Expect = 5e-36
Identities = 62/117 (52%), Positives = 90/117 (76%)
Frame = +1
Query: 253 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 432
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 433 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPXY 603
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP Y
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVY 166
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 114 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 218
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 122 bits (293), Expect = 8e-29
Identities = 59/127 (46%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Frame = +1
Query: 256 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 432
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 433 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 588
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 589 TVPXYXG 609
+P G
Sbjct: 193 IIPVAEG 199
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 209
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 79.4 bits (187), Expect = 5e-16
Identities = 39/125 (31%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Frame = +1
Query: 244 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 420
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 421 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 594
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 595 PXYXG 609
P G
Sbjct: 181 PVLNG 185
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 221
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 77.4 bits (182), Expect = 2e-15
Identities = 38/104 (36%), Positives = 55/104 (52%)
Frame = +1
Query: 298 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 477
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 478 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPXYXG 609
E+ PA Y+A Q + +ASG+ T ++D G S Y G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDG 166
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 212
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.1 bits (164), Expect = 3e-13
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Frame = +1
Query: 217 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 390
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 391 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 570
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 571 GDGVSHTVPXYXG 609
G + P G
Sbjct: 157 GSDNASVTPVVDG 169
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 212
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 51.2 bits (117), Expect = 2e-07
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +1
Query: 313 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 480
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 481 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPXYXG 609
P +A + ++ LYA G G+V+D G + P G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 373 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 516
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.33
Identities = 24/80 (30%), Positives = 32/80 (40%)
Frame = +2
Query: 476 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDXTPPRHPASGLXRSX 655
S ST PP S S + + + SC T ++ PT ST TP P S
Sbjct: 365 SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTG-NSTTPVTPTVPPTSSSTPLT 423
Query: 656 TSXTTS*XSSPXAGYSFTTT 715
T+ T+ S P T+T
Sbjct: 424 TTNCTTSTSVPYTSTPVTST 443
Score = 27.9 bits (59), Expect = 1.7
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Frame = +2
Query: 509 PSKPCSRCTRPVVPPV-SCWTPA--TVSPTPCPSTKDXTPPRH------PASGLXRSXTS 661
PS S T +PP + TP TV PT ST PP +S L + TS
Sbjct: 333 PSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTS 392
Query: 662 XTTS*XSSPXAGYSFT 709
TTS S P G S T
Sbjct: 393 CTTS-TSIPPTGNSTT 407
Score = 27.1 bits (57), Expect = 3.0
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +2
Query: 485 STRPPCTSPSKPCSRCTRPVVPPV----SCWTPAT--VSPTPCPSTKDXTPPRHPAS--- 637
S+ P S S C+ T +PP S TP T V PT ST PP +S
Sbjct: 103 SSSSPLPSTSTSCTTSTS--IPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDT 160
Query: 638 ---GLXRSXTSXTTS*XSSPXAGYSFTTT 715
L + TS TTS P G S +T
Sbjct: 161 NSNPLPTTSTSCTTSTSIPPTGGSSSLST 189
Score = 26.6 bits (56), Expect = 4.0
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Frame = +2
Query: 509 PSKPCSRCTRPVVPPV-SCWTPA--TVSPTPCPSTKDXTPPRH------PASGLXRSXTS 661
P+ S T +PP + TP TV PT ST PP +S L + TS
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTS 338
Query: 662 XTTS*XSSPXAGYSFT 709
TTS S P G S T
Sbjct: 339 CTTS-TSIPPTGNSTT 353
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +2
Query: 476 SKHSTRPPCTSPSKPCSRCTRPVVPPV-SCWTPATVSPTPCPSTKDXTPPRHPASGLXRS 652
S ++ P S S C+ T +PP + TP T + P ++ TPP ++ +
Sbjct: 324 STGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381
Query: 653 XTSXTTS*XSSPXAGYSFTTTG 718
+S S +S S TG
Sbjct: 382 SSSPLLSTSTSCTTSTSIPPTG 403
Score = 25.8 bits (54), Expect = 7.0
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Frame = +2
Query: 497 PCTSPSKPCSRCTRPVVPPVSCWTPAT--VSPTPCPSTKDXTPPRHP------ASGLXRS 652
P TS S S P S TP T V PT ST PP +S L +
Sbjct: 166 PTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 225
Query: 653 XTSXTTS*XSSPXAGYSFTTT 715
TS TTS S P G S +T
Sbjct: 226 STSCTTS-TSIPTGGSSSLST 245
Score = 25.4 bits (53), Expect = 9.3
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 476 SKHSTRPPCTSPSKPCSRCTRPVVPPV-SCWTPATVSPTPCPSTKDXTPPRHPASGLXRS 652
S + P + S C+ T +PP + TP T + P ++ TPP ++ +
Sbjct: 270 STDTNSSPLPTTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327
Query: 653 XTSXTTS*XSSPXAGYSFTTTG 718
+S S +S S TG
Sbjct: 328 SSSPLPSTSTSCTTSTSIPPTG 349
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -3
Query: 630 GWRGGVXSXVXGHGVGDTVAGVQHDTGGTTGR 535
G RGG G G GDTV GG GR
Sbjct: 128 GGRGGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 497 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDXTPP 622
P T+P P T PV P S P+ P P PS++ + P
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIP 1077
Score = 25.4 bits (53), Expect = 9.3
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Frame = +2
Query: 494 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDXTPPRHPASGLXRSXT 658
PP +P P P VPP S P A + P P P+ K PP PA
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK--APP-VPAPSSEAPSV 1249
Query: 659 SXTTS*XSSPXAGYSFTTT 715
S S SP + S + T
Sbjct: 1250 STPRSSVPSPHSNASPSPT 1268
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 518 PCSRCTRPVVPPVSCWTPATVSPTPCPST 604
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 494 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 601
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 494 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDXTPPRHPAS 637
PP PS P P +PP A ++P P P+ PP PA+
Sbjct: 432 PPSAPPSLPMGAPAAPPLPP-----SAPIAP-PLPAGMPAAPPLPPAA 473
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 415 LLTEAPLNPKANREKMTQIMFETFN 489
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 572 ATVSPTPCPSTKDXTPPRHPA 634
A +SP P PS D P +PA
Sbjct: 1398 AAISPNPMPSAHDLLPTSNPA 1418
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 153 TYRSHCLLPTRQLLRRTS*ISEI 85
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +2
Query: 518 PCSRCTRPVVPPVSCWTPATVSPTPC---PSTKDXTPPRHPAS 637
P S RP +PP S PA+ P P P PP PA+
Sbjct: 140 PTSAPPRPSIPPPS---PASAPPIPSKAPPIPSSLPPPAQPAA 179
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 569 PATVSPTPCPSTKDXTPPRHPASGLXRSXTSXTTS 673
P+T S P P + TP R+P + L R + + S
Sbjct: 186 PSTPSNGPAPVSTTATPSRNPVTRLQRIFSQNSVS 220
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 518 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDXTPPR 625
PC+ + PPV+C TP P C K P+
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHPQ 656
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 429 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 578
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,049
Number of Sequences: 5004
Number of extensions: 64687
Number of successful extensions: 247
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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