Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_G17
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 246 4e-66
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 243 2e-65
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 4.3
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 26 5.7
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 10.0
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 246 bits (601), Expect = 4e-66
Identities = 116/195 (59%), Positives = 140/195 (71%)
Frame = +1
Query: 100 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 279
++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR + IENP
Sbjct: 15 DDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENP 74
Query: 280 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 459
ADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D
Sbjct: 75 ADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADA 134
Query: 460 QPITEASYVNIPVIALCNTDPPLRFVDIAIPCNTKSSHSIGLMWWXXXXXXXXXXXXXXX 639
Q I EAS+VNIPVIALC+TD L VD+AIP N K SIGL W+
Sbjct: 135 QAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISR 194
Query: 640 XXXWDVVVDLSFYRD 684
W+V+ DL FYRD
Sbjct: 195 TTAWEVMPDLYFYRD 209
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 243 bits (595), Expect = 2e-65
Identities = 113/195 (57%), Positives = 140/195 (71%)
Frame = +1
Query: 100 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 279
+ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENP
Sbjct: 14 DEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENP 73
Query: 280 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 459
ADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D
Sbjct: 74 ADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADA 133
Query: 460 QPITEASYVNIPVIALCNTDPPLRFVDIAIPCNTKSSHSIGLMWWXXXXXXXXXXXXXXX 639
Q I EAS+VNIPVIALC+TD L VDIAIP N K SIGL+W+
Sbjct: 134 QAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSR 193
Query: 640 XXXWDVVVDLSFYRD 684
WDV+ DL FYRD
Sbjct: 194 SAPWDVMPDLYFYRD 208
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.9 bits (94), Expect = 1e-04
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 27/177 (15%)
Frame = +1
Query: 118 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 291
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 292 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 408
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 409 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDPPLRFVDIAIPCNTKS 567
++ P L+++L+P ++ EA ++P I + +TD R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 208 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 384
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 471 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 292
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 291 EHISGVLDG 265
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 4.3
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +1
Query: 343 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 507
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 508 CNTDPPLRFVDIAIPCNTKSSHSI 579
C+ + RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 562 WCCMG*QCPQILVGG 518
WCC G C ++L GG
Sbjct: 55 WCCNGKGCKKVLAGG 69
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 10.0
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 292 RTHQRGSRWLRQHEQPEQVFPRYDA 218
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,745,742
Number of Sequences: 5004
Number of extensions: 81104
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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