Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_G12
         (835 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130437-1|AAI30438.1|  504|Homo sapiens DMRT-like family A1 pro...    31   3.9  
BC130435-1|AAI30436.1|  504|Homo sapiens DMRT-like family A1 pro...    31   3.9  
AL161730-1|CAH73857.1|  504|Homo sapiens DMRT-like family A1 pro...    31   3.9  
AK096011-1|BAC04672.1|  504|Homo sapiens protein ( Homo sapiens ...    31   3.9  
BC142963-1|AAI42964.1|  531|Homo sapiens SMARCD2 protein protein.      31   6.8  

>BC130437-1|AAI30438.1|  504|Homo sapiens DMRT-like family A1
           protein.
          Length = 504

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 LRP*NLYLMVGGWAATAGASPSG*RRC*PAMGILAGISS 252
           LRP +L+L     AA A A+ SG   C PA G+ +G+ +
Sbjct: 48  LRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGLESGVGA 86


>BC130435-1|AAI30436.1|  504|Homo sapiens DMRT-like family A1
           protein.
          Length = 504

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 LRP*NLYLMVGGWAATAGASPSG*RRC*PAMGILAGISS 252
           LRP +L+L     AA A A+ SG   C PA G+ +G+ +
Sbjct: 48  LRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGLESGVGA 86


>AL161730-1|CAH73857.1|  504|Homo sapiens DMRT-like family A1
           protein.
          Length = 504

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 LRP*NLYLMVGGWAATAGASPSG*RRC*PAMGILAGISS 252
           LRP +L+L     AA A A+ SG   C PA G+ +G+ +
Sbjct: 48  LRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGLESGVGA 86


>AK096011-1|BAC04672.1|  504|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38692 fis, clone KIDNE2001713, weakly similar to
           Oreochromis niloticus sex-determining protein DMO mRNA.
           ).
          Length = 504

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 LRP*NLYLMVGGWAATAGASPSG*RRC*PAMGILAGISS 252
           LRP +L+L     AA A A+ SG   C PA G+ +G+ +
Sbjct: 48  LRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGLESGVGA 86


>BC142963-1|AAI42964.1|  531|Homo sapiens SMARCD2 protein protein.
          Length = 531

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -3

Query: 236 KIPMAGQHLRQPEGE-----APAVAAHPPTMRYKF*GLNIVTTATPPFEPKRITASRRK 75
           ++PMAG  +  P G      AP     PPTM   F    +V  A PP   +R    RRK
Sbjct: 81  RMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRK 139


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,947,336
Number of Sequences: 237096
Number of extensions: 2656761
Number of successful extensions: 10423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10416
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)