Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_G08
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    32   0.44 
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053...    29   4.1  
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362...    29   4.1  
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310...    29   5.4  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   5.4  
01_06_0456 + 29521282-29522064                                         28   7.2  
08_01_0827 + 8016704-8017150                                           28   9.5  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 42   GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLXELDS 194
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L+S
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443


>06_03_0507 +
           21603472-21603750,21604371-21604463,21605046-21605372,
           21605588-21605863,21606095-21607114
          Length = 664

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 457 PPSQXPAWQGPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 332
           PP Q PA + P T +    +R +AF    +S R  ++T RPP
Sbjct: 397 PPLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435


>03_05_0934 -
           28935728-28935859,28936000-28936122,28936172-28936284,
           28936363-28936430,28936517-28936600,28936937-28936980,
           28937061-28937204,28937518-28937582,28937722-28937814,
           28938132-28938262,28938375-28938394,28938904-28938987,
           28939157-28939330,28940106-28940195,28940293-28940364,
           28941318-28941365,28941458-28941570,28942786-28942849,
           28942943-28943016,28943162-28943201
          Length = 591

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 279 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVP 139
           + +GFS TI R+D  ++  L      P       G+  PA  P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347


>06_01_0437 +
           3101449-3101521,3101872-3102232,3103766-3103958,
           3104051-3104848,3104997-3105143,3106024-3106377
          Length = 641

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 336 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGPCQAGX*LG 455
           G+T+ R  R  A W RG  A RR +LP     G  +AG  LG
Sbjct: 36  GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLG 77


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 372 TTLHAWNETPCARRYY 325
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -1

Query: 439 AWQ--GPRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 317
           AW+   P +G+RG  +RRR  P    S R  R    +T+RP + S A
Sbjct: 12  AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58


>08_01_0827 + 8016704-8017150
          Length = 148

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 491 PXNPXLFLTXXPPQSXPRLAGSSNRITREF*--TATSVSATSPLCTLGTKHRAPA 333
           P  P   L   PP    +  G++ R+T  F   TA S SATS LC   +   AP+
Sbjct: 5   PVPPPRPLLPSPPPPRRQEVGAAVRLTTRFPMTTAPSGSATSALCRSCSSAAAPS 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,977
Number of Sequences: 37544
Number of extensions: 304107
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)