Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_G06
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   185   4e-47
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    29   5.4  
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  185 bits (450), Expect = 4e-47
 Identities = 98/204 (48%), Positives = 124/204 (60%), Gaps = 2/204 (0%)
 Frame = +2

Query: 134 LESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXF--PAKDEQ 307
           +E+ +   L G  L+E  RI +GR       L+ SSI              +   A+ EQ
Sbjct: 11  VETALAEKLDGVSLDEVERILYGRPYRA---LEISSIAEKLAQDGDFQLSGYIVDAQKEQ 67

Query: 308 TRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFSKVKKIIDVAGQEGVNIICFQELWNMPF 487
           TR PR+V+V  IQ+ I  PT   V EQ+ AI  +V  +I+ A   G N+I  QE W MPF
Sbjct: 68  TRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPF 127

Query: 488 AFCTREKQPWCEFAESAEDGPTTXFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVIS 667
           AFCTRE+ PW EFAES   GPTT FL +LA+K+ +VI+S ILERDE+  D++WNTAVVIS
Sbjct: 128 AFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVIS 187

Query: 668 DTGNVIXKHRKNHIPRXGDLTNPT 739
            TG VI + RKNHIPR GD    T
Sbjct: 188 HTGRVIGRSRKNHIPRVGDFNEST 211


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +2

Query: 302 EQTRPPRIVKVGIIQHSIA-VPTDRPV---NEQKKAIFSKVKKIIDVAGQEGVN 451
           ++TRP  +++  +I+     VP+++P    NE+ K    + KK+++  G  G N
Sbjct: 571 QETRPTTVIRRTVIRKKEEMVPSEKPEVSENEKPKRRLVRKKKVVEGDGMNGTN 624


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 392 KAIFSKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 526
           K +F   ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 392 KAIFSKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 526
           K +F   ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,434
Number of Sequences: 27780
Number of extensions: 367406
Number of successful extensions: 969
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)