Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_G03
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 36 0.052
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.37
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.49
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.0
06_01_0486 - 3455030-3455770 30 2.6
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.4
03_01_0515 - 3864796-3865425 29 3.4
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 4.5
03_05_0576 + 25765137-25766420 29 4.5
02_04_0400 - 22608519-22608844,22609044-22609122 29 6.0
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 28 7.9
07_03_1136 + 24218601-24218734,24218769-24219906 28 7.9
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.9
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 7.9
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 7.9
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.9
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.9
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 35.5 bits (78), Expect = 0.052
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +2
Query: 677 PPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXPXP 826
PP P P P PP P GP P P PP P P
Sbjct: 1123 PPLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPP 1172
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 665 AGGXPPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXP 820
A PP P PK PP P A P P P P GPP P
Sbjct: 309 ASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGP-PPPPPAKGPPPPPPP 359
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +2
Query: 665 AGGXPPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXP 820
A PP P PK P PP P P + P P PP P
Sbjct: 322 AAAAPPPPPPPKAAP---PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 332 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 168
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 230 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 346
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +2
Query: 677 PPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXP 820
PP P P P PP P P P P P P P
Sbjct: 67 PPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPP 114
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 245 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 156
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +2
Query: 677 PPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXPXP 826
PP P + P PP P + P P P P PP P P
Sbjct: 61 PPPPAAGPLMPPPPPP-PSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPP 109
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +2
Query: 677 PPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXPXP 826
PP P P P P P P P+ P P GP P P
Sbjct: 569 PPAPQAPMP-PLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPP 617
>03_05_0576 + 25765137-25766420
Length = 427
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 677 PPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXP 781
PP P P P PPA P PR P P
Sbjct: 80 PPQPSSPPPPPPSPPPAAAVSVSPPTQPRPRPELP 114
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -1
Query: 825 GXGXXXXGGPXXXXXGXXGXXRGXXXGPAXXXGAGGXXXGKTFGXXGXGGXPP 667
G G GG G G G G G GG G G G G PP
Sbjct: 44 GGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPP 96
>09_06_0244 +
21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 539 HPRTXLERASXHVXGP--IV*LHRNWSANVQALYPGDGAV 426
HPR LE AS V P + L +N SANVQ +PG+ +V
Sbjct: 105 HPRHGLE-ASSSVEQPSCLGPLFQNTSANVQGSFPGECSV 143
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 779 GXXXGXXGXXXARPXGXXXGGXXRGKPLXXVAGGGSPPXA 660
G G G ARP G GG P GGG+ P A
Sbjct: 95 GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPA 134
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 117 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 272
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +2
Query: 677 PPXPXXPKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXPXP 826
PP P P P PP P P P P GPP P P
Sbjct: 282 PPPPNAPMGMPPRIPPPPVGGTQP-------PPPPPPLANGPPRSIPPPP 324
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +2
Query: 695 PKVFPXXXPPAPXXXAGPXXXPRXXPXXPXXXXXGPPXXXXP 820
PK+ P PP P P P P P G P P
Sbjct: 349 PKLMPPPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPP 390
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 414 GRGERSPRRWLQPRLAVPRQASTSVPRTP 328
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 359 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 192
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,024,806
Number of Sequences: 37544
Number of extensions: 459909
Number of successful extensions: 1788
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1699
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -