Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_G02
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.032
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.53 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 111 PPPXXGGXPPPPXXXG-GGXXPPPP 40
           P P  GG PPPP   G  G  PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 32.7 bits (71), Expect = 0.075
 Identities = 19/53 (35%), Positives = 20/53 (37%)
 Frame = +3

Query: 129 PPPXXPXGXKKGXPPXPPXXGGXXXGGGGXXPPPPXNXXTPPXGXGGXKKXPP 287
           P P  P     G PP PP   G    G G  PPPP     P    GG +   P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPG--VAGAGPPPPPP---PPPAVSAGGSRYYAP 795



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -2

Query: 113 PPPPXXGGXPPPPXXXG--GVXXPP 45
           PP P  GG PPPP   G  G   PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 129 PPPXXPXGXKKGXPPXPPXXGGXXXGGGGXXPPPPXNXXTP 251
           PPP  P     G PP PP       GG     P P     P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = -1

Query: 111 PPPXXGGXP-PPPXXXGGGXXPPPPXXG 31
           P P     P PPP    GG  PPPP  G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +1

Query: 265 GGXKXPPPXKXXKTXXGXXPPXXPPXXGGGGGXL*XPPPRXFXXP 399
           GG   PPP           PP  PP    GG     P P+    P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +3

Query: 129 PPPXXPXGXKKGXPPXPPXXGGXXXGGGGXXPPPPXNXXTPP 254
           PPP  P G     PP PP        GG     P       P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 268 PPXPXGGVXLXXGGGGXXPPPPKXXPPXXGGXGGXPFFXP 149
           PP P  GV       G  PPPP   PP     GG  ++ P
Sbjct: 763 PPPPPPGV------AGAGPPPPPPPPPAVSA-GGSRYYAP 795


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
 Frame = +3

Query: 117 KKXXPPPXXPXGXKKGXPPXPPXXGGXXXGGGGXXPPPPXNXXT-----PPXGXGGXKKX 281
           KK  PPP  P    +G    PP   G         PPPP +        PP G       
Sbjct: 308 KKRPPPPPPPSRRNRG---KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364

Query: 282 PP 287
           PP
Sbjct: 365 PP 366



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 61  PPXXXGGGGXPPXXGGGGKKKXXXPXXPPXGXKKGXPPXP 180
           PP      G PP   G        P  PP     G  P P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 26/100 (26%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
 Frame = -3

Query: 325 GGXPXXXFXXXXXGGXFXFPPXPXGGVXLXXGGGGXXPPPPKXXPPXXGGXGGXPFFXPX 146
           GG           G  F       GG     GG G  PP P       G  G        
Sbjct: 164 GGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGH 223

Query: 145 GXXGGGXFFFXXXXXXXXXXXXPXXXG-GGFXXPPXKXGG 29
           G  GGG   F                G GGF   P   GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 111 PPPXXGGXPPPPXXXGGGXXPPPPXXG 31
           PP      PPPP        PPPP  G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 108 PPXXGGXPPPPXXXGGGXXPPPPXXGG 28
           PP     PPPP        PPPP   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.158    0.569 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,347
Number of Sequences: 5004
Number of extensions: 36299
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)