Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_F21
         (1007 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0016 - 376742-376883,377973-378964                               27   0.66 
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856...    26   0.89 
06_03_1363 - 29576265-29577575                                         27   1.4  
02_05_0686 - 30900748-30902167,30903442-30904742                       25   2.9  

>09_01_0016 - 376742-376883,377973-378964
          Length = 377

 Score = 26.6 bits (56), Expect(2) = 0.66
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 597 GGEXKKXXXXXXXPPPPPPP 538
           G   KK       PPPPPPP
Sbjct: 49  GAPTKKAPFVAPPPPPPPPP 68



 Score = 24.2 bits (50), Expect(2) = 0.66
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 558 PPPPPPPXXXXK 523
           PPPPPPP    K
Sbjct: 64  PPPPPPPQQNGK 75


>03_03_0038 +
           13984525-13984917,13985351-13985429,13985535-13985628,
           13985712-13985844
          Length = 232

 Score = 26.2 bits (55), Expect(2) = 0.89
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 597 GGEXKKXXXXXXXPPPPPPP 538
           GG  KK        PPPPPP
Sbjct: 24  GGRRKKAGRRGEAKPPPPPP 43



 Score = 24.2 bits (50), Expect(2) = 0.89
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 558 PPPPPPPXXXXK 523
           PPPPPPP    K
Sbjct: 80  PPPPPPPPKQEK 91


>06_03_1363 - 29576265-29577575
          Length = 436

 Score = 27.1 bits (57), Expect(2) = 1.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 557 PPPPPPPAXXXKXXXXXXGPP 495
           PPPPPPPA   +       PP
Sbjct: 390 PPPPPPPAARRESWAAPPPPP 410



 Score = 22.6 bits (46), Expect(2) = 1.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 593 GXXKXXXXXXXXPPPPPPPA 534
           G  K        PPPPPP A
Sbjct: 379 GGGKVLIVDVTPPPPPPPAA 398


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 24.6 bits (51), Expect(2) = 2.9
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 554 PPPPPPAXXXKXXXXXXGPP 495
           PPPPPP           GPP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPP 345



 Score = 23.8 bits (49), Expect(2) = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 557 PPPPPPP 537
           PPPPPPP
Sbjct: 313 PPPPPPP 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,943,500
Number of Sequences: 37544
Number of extensions: 238502
Number of successful extensions: 22078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12776
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2963829220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)