Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_F15
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   208   7e-55
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   207   2e-54
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.5  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   5.5  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.2  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  208 bits (508), Expect = 7e-55
 Identities = 110/210 (52%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
 Frame = +1

Query: 118 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 297
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 298 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 477
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 478 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINQDQTGCHLPEAPQGMV* 657
                              ARGH IE+IPE+PLVV D VQ   + +    L +  +    
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKA--- 176

Query: 658 YP*GVQVSAS---SCW*GKMPNRXRIQRKG 738
           Y   V+V+ S       GK+ NR  +QR+G
Sbjct: 177 YRDVVKVANSRKLRAGKGKLRNRRHVQRRG 206



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 24/62 (38%), Positives = 38/62 (61%)
 Frame = +2

Query: 617 QAVIFLRRLKAWSDILKVYKSQRLRAGRVKCPTVXVSSVRGPLIIFTXGSGV*LXAFXXX 796
           +AV  L+ +KA+ D++KV  S++LRAG+ K         RGPL++F   +G+ + AF   
Sbjct: 166 EAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGI-VKAFRNI 224

Query: 797 PG 802
           PG
Sbjct: 225 PG 226


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  207 bits (505), Expect = 2e-54
 Identities = 108/210 (51%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
 Frame = +1

Query: 118 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 297
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 298 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 477
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 478 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINQDQTGCHLPEAPQGMV* 657
                              ARGH IE+IPE+PLVV D VQ   + +    L +  +    
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKA--- 176

Query: 658 YP*GVQVSAS---SCW*GKMPNRXRIQRKG 738
           Y   ++V+ S       GK+ NR  +QR+G
Sbjct: 177 YRDVIKVANSRKLRAGKGKLRNRRHVQRRG 206



 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 24/62 (38%), Positives = 38/62 (61%)
 Frame = +2

Query: 617 QAVIFLRRLKAWSDILKVYKSQRLRAGRVKCPTVXVSSVRGPLIIFTXGSGV*LXAFXXX 796
           +AV  L+ +KA+ D++KV  S++LRAG+ K         RGPL++F   +G+ + AF   
Sbjct: 166 EAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGI-VKAFRNI 224

Query: 797 PG 802
           PG
Sbjct: 225 PG 226


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 179 APCTVSLFSEYTDTKGRATDRLISLL 102
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 541 GHIIEKIPE-LPLVVADKVQEINQDQTGCH 627
           G++I  IP  LPL VA+K+++  ++   CH
Sbjct: 650 GYVIYDIPRALPLKVAEKIKKSLRETDFCH 679


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 136 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 59
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,469
Number of Sequences: 5004
Number of extensions: 57681
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)