Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_F11
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.68 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -1

Query: 622 GXFFXXXKXXGGXFFXXGGGGXXPPPXPXXXGG 524
           G  F      GG F   GGG   PPP P   GG
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGG 209


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = -1

Query: 565 GGXXPPPXPXXXGGGEKKTXPAPPQKKFXXGGXFFXP 455
           GG  PPP P    G      P PP      G  ++ P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = -1

Query: 562 GXXPPPXPXXXGGGEKKTXPAPPQKKFXXGGXFFXPP 452
           G  PPP P     G     P PP      GG  +  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 522 PPPXXXGXGGGXXPPPP 572
           PPP   G  G   PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +3

Query: 471 PPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPP 593
           PP  N   G +      PPP       G  P PP  ++ PP
Sbjct: 325 PPIGN---GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,675
Number of Sequences: 5004
Number of extensions: 20039
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)