Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_F11
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 32 0.71
04_04_1351 - 32827136-32827984 30 2.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.9
01_01_0083 + 631196-631675 30 2.9
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 29 3.8
01_05_0433 - 22094784-22095659 29 3.8
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 5.0
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 5.0
07_01_0080 + 587674-588510 29 5.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 6.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.6
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 8.8
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 28 8.8
01_03_0005 + 11568545-11569119,11569179-11569191 28 8.8
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -1
Query: 592 GGXFFXXGGGGXXPPPXPXXXGGGEKKTXPAP 497
GG GGGG PP P GGG PAP
Sbjct: 104 GGARPPGGGGGGGPPSLPPGAGGGGGARPPAP 135
>04_04_1351 - 32827136-32827984
Length = 282
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 571 GGGGXXPPPXPXXXGGGEKKTXPAP 497
GGGG P P P GG K P+P
Sbjct: 164 GGGGYSPSPSPPKRHGGRKACPPSP 188
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSP-PPXXXGXGGGXXPPPPXXKNXPP 593
P GG PP GG G P PP G GG PPP PP
Sbjct: 1113 PPPGGITGVPPPPPI--GGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPP 1161
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Frame = +3
Query: 453 GGXKXXPPXKNFFWG----GAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPP 593
GG PP F G A PPP G GG PP P PP
Sbjct: 1158 GGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPP 1208
>01_01_0083 + 631196-631675
Length = 159
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFW-------GGAGXV-FFSPPPXXXGXGGG---XXPPPP 572
P PP + +W GG G + ++ PP G GGG PPPP
Sbjct: 59 PPSSSSSNTPPSSSSYWNYPPPQGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 580 FXXGGGGXXPPPXPXXXGGGEKKTXPAPPQKKFXXGGXFFXPP 452
+ GGGG PP G G P Q+ GG + PP
Sbjct: 55 YYGGGGGYGAPPSTQPYGSGGGYGAPPSTQRPQSYGGGYGAPP 97
>01_05_0433 - 22094784-22095659
Length = 291
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +2
Query: 539 GGGGGXXXPPP--PXKKXPPPXF 601
GGGGG PPP P + PPP +
Sbjct: 35 GGGGGAARPPPMVPGRVPPPPMY 57
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 522 PPPXXXGXGGGXXPPPPXXKNXP 590
PPP G GG PPPP + P
Sbjct: 625 PPPPPPGKPGGPPPPPPRPGSLP 647
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 522 PPPXXXGXGGGXXPPPPXXKNXP 590
PPP G GG PPPP + P
Sbjct: 930 PPPPPPGKPGGPPPPPPPPGSLP 952
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 495 GGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPP 593
GG G PPP G PPPP PP
Sbjct: 83 GGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPP 115
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Frame = +3
Query: 522 PPPXXXGXGGGXXP----PPPXXKNXPP 593
PPP G GGG P PPP PP
Sbjct: 738 PPPGPPGGGGGYLPPVVFPPPYASRGPP 765
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Frame = +3
Query: 522 PPPXXXGXGGGXXPPP-----PXXKNXPP 593
PPP G GGG PPP P + PP
Sbjct: 372 PPPGAAGRGGGGPPPPALPGGPRARGPPP 400
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 565 GGXXPPPXPXXXGGGEKKTXPAPP 494
GG PPP P G ++ P PP
Sbjct: 301 GGTQPPPPPPPLANGPPRSIPPPP 324
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 522 PPPXXXGXGGGXXPPPPXXKNXP 590
PPP G GGG PPP + P
Sbjct: 77 PPPDRFGYGGGRGYPPPPNYDNP 99
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 594 GGGXFXXGGGGXXXPPPPP 538
GGG GGGG P PPP
Sbjct: 124 GGGWQQGGGGGGAYPTPPP 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,101,918
Number of Sequences: 37544
Number of extensions: 411951
Number of successful extensions: 3233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2285
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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