Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_F11
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.64
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.64
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 32 0.64
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 31 0.85
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 31 0.85
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.5
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.0
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 30 2.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.4
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 4.5
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 4.5
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 6.0
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 6.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.9
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 28 7.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPPXXF 602
P G PP F G G + PPP GG PPPP + P +
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMY 363
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPP 593
P GG PP + GG PPP G G PPPP + P
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPP---PPPPRYPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPPXXF 602
P G PP F G G + PPP GG PPPP + P +
Sbjct: 321 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMY 373
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPP 593
P GG PP + GG PPP G G PPPP + P
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPP---PPPPRYPSAGPGMYPPPPPSRPPAP 384
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 495 GGAGXVFFSPPPXXXGXGGGXXPPP 569
GG G PPP G GGG PPP
Sbjct: 23 GGGGCGCAPPPPPACGCGGGAAPPP 47
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 568 GGGXXPPPXPXXXGGGEKKTXPAPPQ 491
GGG PP P GGG PAPP+
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPK 647
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 568 GGGXXPPPXPXXXGGGEKKTXPAPPQ 491
GGG PP P GGG PAPP+
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPK 647
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 553 PPPXPXXXGGGEKKTXPAPPQKKFXXGGXFFXPPXXGKFFXXP 425
PPP P GG + P PP + G + P G + P
Sbjct: 39 PPPPPPPPCGGGYEAPPPPPPPSYAGGPSYAGPSYAGSYGPGP 81
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 571 GGGGXXPPPXPXXXGGGEKKTXPAP 497
GGGG PPP P GG PAP
Sbjct: 62 GGGGCCPPPAPACGGGCGGGVAPAP 86
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPPXXFXXKKXXP 623
P GG PP GG + PPP GG PPPP PP F P
Sbjct: 737 PITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGCPPPPPP----PPPGGFKGGPPPP 787
Query: 624 XXXXFF 641
F
Sbjct: 788 PPPGMF 793
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 565 GGXXPPPXPXXXGGGEKKTXPAPPQKKF 482
GG PPP P GG + P PP F
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPPXXFXXKKXXP 623
P GG PP GG + PPP GG PPPP PP F P
Sbjct: 737 PITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGCPPPPPP----PPPGGFKGGPPPP 787
Query: 624 XXXXFF 641
F
Sbjct: 788 PPPGMF 793
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 565 GGXXPPPXPXXXGGGEKKTXPAPPQKKF 482
GG PPP P GG + P PP F
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPPXXFXXKKXXP 623
P GG PP GG + PPP GG PPPP PP F P
Sbjct: 320 PITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGCPPPPPP----PPPGGFKGGPPPP 370
Query: 624 XXXXFF 641
F
Sbjct: 371 PPPGMF 376
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 565 GGXXPPPXPXXXGGGEKKTXPAPPQKKF 482
GG PPP P GG + P PP F
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 592 GGXFFXXGGGGXXPPPXPXXXGGGEKK 512
GG GG G PPP P GGG ++
Sbjct: 199 GGSGGSGGGSGRFPPPPPPYGGGGRRR 225
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 594 GGGXFXXGGGGXXXPPPPP 538
GGG GGG PPPPP
Sbjct: 198 GGGSGGSGGGSGRFPPPPP 216
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPP 572
P GG PP +F GG G PPP GGG P P
Sbjct: 773 PPRGGMHHMPPPPSFR-GGRGGHGGPPPPHFDRRGGGGPPFRP 814
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPP 572
P G K ++ G G P P G GG PPPP
Sbjct: 636 PGARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGGFMPPPPP 678
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +3
Query: 444 PXXGGXKXXPPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPP 572
P G K ++ G G P P G GG PPPP
Sbjct: 636 PGARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGGFMPPPPP 678
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = -2
Query: 594 GGGXFXXGGGGXXX--PPPPP 538
GGG + GGGG PPPPP
Sbjct: 25 GGGGYSGGGGGGGDAAPPPPP 45
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 539 GGGGGXXXPPPPXKKXPPP 595
GGG G PPPP PPP
Sbjct: 26 GGGCGCGAPPPPPACAPPP 44
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 594 GGGXFXXGGGGXXXPPPPP 538
GGG GGGG PPP P
Sbjct: 60 GGGGGGCGGGGGCAPPPAP 78
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 594 GGGXFXXGGGGXXXPPPPP 538
GGG GGGG PPP P
Sbjct: 60 GGGGGGCGGGGGCAPPPAP 78
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 471 PPXKNFFWGGAGXVFFSPPPXXXGXGGGXXPPPPXXKNXPP 593
PP ++F+ G + PPP G PPP PP
Sbjct: 24 PPPPDWFFPGPLRPWGPPPPWHRNRGPPPFGPPPPWDRPPP 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,567,963
Number of Sequences: 27780
Number of extensions: 209476
Number of successful extensions: 1590
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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