Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_F09
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322... 37 0.016
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 30 2.5
08_02_1276 + 25811020-25811512,25812134-25812541,25814682-258148... 29 3.3
12_02_0704 - 22293955-22294255,22294276-22294602,22294794-222948... 29 5.7
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131... 29 5.7
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184... 28 7.5
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85... 28 9.9
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 28 9.9
>07_03_0042 -
12731228-12731362,12731984-12732046,12732136-12732207,
12732783-12732855,12732937-12733005,12733375-12733439,
12733677-12734087,12734186-12734230,12734338-12734413,
12734555-12734629,12735101-12735207,12736573-12736635
Length = 417
Score = 37.1 bits (82), Expect = 0.016
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +1
Query: 160 TSFYLVFNKIMSTLKLTSEVRSGLYSHWRDVFEHVRSTAKKKH--YADQNTSSGTPQERE 333
TS Y +FNK+ STL S V SG ++ RD V + AK+ + + D+ +SS + ++R
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRDT--RVSTYAKQGYEIFKDELSSSSSRKKRN 221
Query: 334 CSIRKSCNNVSVTSMEDL 387
+ S V ++ +L
Sbjct: 222 HARHASAGTVEKSTRTEL 239
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 289 YADQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 399
+ D SSG+P E S+ K C+ ++S TS D ++E
Sbjct: 523 HEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560
>08_02_1276 +
25811020-25811512,25812134-25812541,25814682-25814878,
25815412-25815575,25815960-25816056,25816102-25816179,
25817840-25817919,25817961-25818082,25818203-25818276
Length = 570
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 614 SSSHWLKNDSCRNYPLVMTDPLFDRLCDRSFT*DFLIS 501
SS W+++D +PL D L+++ C+R D +I+
Sbjct: 121 SSREWMESDVGDGFPLCGFDSLYEKYCERMAVFDKMIT 158
>12_02_0704 -
22293955-22294255,22294276-22294602,22294794-22294840,
22297252-22297316,22297439-22297541
Length = 280
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +1
Query: 163 SFYLVFNKIMSTLKLTSEVRSGLYSHW---RDVFEHVRSTAKKKHYADQNTSSGTPQERE 333
+ Y + + + +TLK GL + W ++ FE ++T + A+Q + + E
Sbjct: 129 AMYFLRHHLCATLKNEHMATKGLLTLWTTLKEWFEKRKNTTLPQ--AEQEWAHLSVTEYN 186
Query: 334 CSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFT 468
++ + C N+S++ E+I + H++ R+H T
Sbjct: 187 SALHQICINLSLSGKVVTDKEKIEKTLSTFHLSAMHSTRNHRRMT 231
>03_06_0014 -
31012116-31012229,31012773-31012985,31013058-31013171,
31013909-31014040,31014624-31014692,31014763-31015017,
31015347-31015520,31016104-31016280,31016999-31017107,
31017343-31017506,31018221-31018517
Length = 605
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 202 KLTSEVRSGLYSHWRDVFEHVRSTAKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSME 381
KLT++ SG Y+ R T K + + D+N +ERE + N+ +S
Sbjct: 371 KLTTDFFSGAYAITRKASTEDEKTIKMQTWIDENDPEKVKEERE---KAEGENIRASSSL 427
Query: 382 DLSHEEIVTSY 414
E++ Y
Sbjct: 428 QRKREQVKRKY 438
>10_08_0364 +
17217631-17217833,17218134-17218308,17218391-17218474,
17218561-17218802,17218883-17219108,17219246-17219325,
17219408-17219492,17219665-17219796,17219927-17220040,
17220123-17220170,17220413-17220497,17220722-17220834
Length = 528
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 280 KKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHM 459
+KHY +Q + +ER CS+ K + +V+ E IV + +RH M
Sbjct: 52 EKHYKEQMKNLQDRKERRCSLEKKLADANVSEEE---QHNIVKQFEKKETEYMRMQRHKM 108
Query: 460 A 462
+
Sbjct: 109 S 109
>07_01_0116 -
855122-855352,856733-857059,857095-858481,858636-858895
Length = 734
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 671 SATIHSLMSW-FTVLVPYNXSSSHWLKNDS 585
SA + SL+S FTVL Y+ + HWL+ S
Sbjct: 261 SAAVWSLVSAAFTVLTAYSTTKLHWLQGGS 290
>01_05_0078 + 17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = +1
Query: 304 TSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVT-SYVLAHVAQFDCRRHHMAFTNGNT 480
+ T Q R + CNN ++ H I S + F+ R H GN
Sbjct: 808 SKQATYQGRYLASNNECNNAFEGKIDPPFHTNIDDISRKFSPGTDFEVNRQHFTAPTGNV 867
Query: 481 TRNKLLQEIKKSQVKLRSHNRSNNGSVMTSG 573
+ L++ + RS +R+ N T+G
Sbjct: 868 YSLQSLRDSDRFYRTQRSEDRNTNSLESTTG 898
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,264,100
Number of Sequences: 37544
Number of extensions: 336141
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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