Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_F06
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   3.2  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.5  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 195 LPSSLHQK*DQDSTLTGVTCLNMF-EVQQKKKHDADQNTSSGTPQERECSIRKSCNNVSV 371
           LP  L +   ++   T  +C   F EVQ++K+ + D+    G    ++ S+R+  + +  
Sbjct: 27  LPPDLLKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILKGVDLTQQDSVREKIHEIQ- 85

Query: 372 TSMEDLSHE 398
            SM  LS +
Sbjct: 86  -SMSQLSEK 93


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 465  FTNGNTTRNKLLQEIKASANLK*NRSQ*WICHDEWVVPT-----RIVFKPMTTARV 617
            F N   + ++L+  ++ SA +       +IC DE  +PT      ++ KP+T   +
Sbjct: 1271 FGNDKVSSSRLMYSVRTSATINSRVPFVYICEDETCIPTDLQSDGVLLKPITCENI 1326


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 357 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNT 482
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
 Frame = +3

Query: 276  QKKKHDADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEE---------IVTSYVLAH 428
            +K+K    Q   SG   +   SIRK+C N+ +     L H           +  +Y +A 
Sbjct: 1716 KKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHALNPFEANYWVPINYSVAA 1775

Query: 429  VAQFDCRLHHMA 464
               +DC L+  +
Sbjct: 1776 STAYDCHLYEQS 1787


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,242
Number of Sequences: 5004
Number of extensions: 63433
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)