Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_F06
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    28   9.4  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    28   9.4  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    28   9.4  
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    28   9.4  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    28   9.4  

>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 482 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 381
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 482 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 381
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 482 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 381
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 204 SLHQK*DQDSTLTGVTCLNMFEVQQ--KKKHDADQNTSSGT 320
           SLHQ     S  +GVTC+ M  + +  K ++D   NT+ GT
Sbjct: 260 SLHQLSQMGSLSSGVTCVRMRPMDELTKVENDPFANTALGT 300


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9a protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 204 SLHQK*DQDSTLTGVTCLNMFEVQQ--KKKHDADQNTSSGT 320
           SLHQ     S  +GVTC+ M  + +  K ++D   NT+ GT
Sbjct: 371 SLHQLSQMGSLSSGVTCVRMRPMDELTKVENDPFANTALGT 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,133,795
Number of Sequences: 27780
Number of extensions: 363551
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)