Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_F01
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.82 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.5  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 241 VRVHRADTGRSSNELDRQTTEXERRGMGLQHLAGVLGNACXGLT 372
           +R H+   GR+  ELDR+ T+ ++R   L  +  + G+A  G T
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERAL--IQEIKGSAKAGNT 59


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +3

Query: 420 PRPXYXIPAPXPAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPP 557
           P P   +  P PA  P+   P +        PPPP     + P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 319 FPCVPTQSFVDPIHLKICQYPHGGL 245
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/57 (24%), Positives = 18/57 (31%)
 Frame = +2

Query: 509  SAPPTLPTARFXPXASXXPXXXPXXXAXVPXPXXPSXXXPPTSXPXXXLLXAPPXXP 679
            S PP  P +   P  S      P      P    P    PP++ P      + P  P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 26/116 (22%), Positives = 32/116 (27%), Gaps = 2/116 (1%)
 Frame = +3

Query: 441 PAPXPAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPPXXRGXXPXXSXXCPXRV--SR 614
           P P P     G  P     R    PPPP     +   PP         +   P      R
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398

Query: 615 RXXDXPRLXPXAXSSPRRLXXPPXLXPPFXXRXXXWSXPXPXSXXRXXXXLPQXAP 782
                P L   + +S   +  PP L P         + P           LP  AP
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 24/94 (25%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
 Frame = +3

Query: 441 PAPXPAXXPLGR*PSSXXXRXHXRPPPP----CXXHXSXPXPPXXRGXXPXXSXXCPXRV 608
           P P P+    G+ P          PPPP         S P PP  R   P          
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 609 SRRXXDXPRLXPXAXSSPRRLXXPPXLXPPFXXR 710
            R+        P   SS R +  PP   P    R
Sbjct: 373 GRQ--------PPPLSSSRAVSNPPAPPPAIPGR 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,411
Number of Sequences: 5004
Number of extensions: 35595
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)