Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_F01
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 36 0.027
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 33 0.19
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 32 0.44
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.8
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 30 1.8
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 30 2.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.4
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 30 2.4
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 29 5.4
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 28 7.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.5
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 28 9.5
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 164 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWL 340
YD E+P + L +L+ ++E + + ++ ++ W D RLS NA W +T +
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNASAWQNTTMI 121
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/80 (21%), Positives = 34/80 (42%)
Frame = +2
Query: 101 SAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQM 280
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 281 NWIDKRLSXNAGEWGCSTWL 340
+W D +S + +WG S WL
Sbjct: 114 SWNDTMVSWDKEQWGLS-WL 132
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +2
Query: 143 IDSLLATYDRESP----PDSKIVVNLTL---HLRHANIRESESTVRILADLQMNWIDKRL 301
+ + A +D P PD+ N TL +L+ + E E V ++ +L W D RL
Sbjct: 50 VSPVYAWFDTSKPLGYDPDAPQRYNYTLFLYNLKLIQVNEPEEQVSVVLELMEYWYDPRL 109
Query: 302 SXNAGEW 322
S NA ++
Sbjct: 110 SWNASDY 116
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/102 (27%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Frame = +3
Query: 402 AGXLXXPRPXYXIPAPX--PAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPPXXRGXX 575
AG PR P P P P G P PPPP + PP G
Sbjct: 261 AGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGS 320
Query: 576 PXXS-XXCPXRVSRRXXDXPRLXPXAXSSPRRLXXPPXLXPP 698
P + P R+ P P S P PP PP
Sbjct: 321 PPPAGTGSPPPPPRQKRQAPERSPPTGSPP--TGSPPTGRPP 360
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +2
Query: 497 PXXXSAPPTLPTARFXPXASXXPXXXPXXXAXVPXPXXPSXXXPPTSXPXXXLLXAPPXX 676
P S PP P P A P P P S PPT P P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 677 P 679
P
Sbjct: 292 P 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/102 (27%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Frame = +3
Query: 402 AGXLXXPRPXYXIPAPX--PAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPPXXRGXX 575
AG PR P P P P G P PPPP + PP G
Sbjct: 282 AGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGS 341
Query: 576 PXXS-XXCPXRVSRRXXDXPRLXPXAXSSPRRLXXPPXLXPP 698
P + P R+ P P S P PP PP
Sbjct: 342 PPPAGTGSPPPPPRQKRQAPERSPPTGSPP--TGSPPTGRPP 381
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +2
Query: 497 PXXXSAPPTLPTARFXPXASXXPXXXPXXXAXVPXPXXPSXXXPPTSXPXXXLLXAPPXX 676
P S PP P P A P P P S PPT P P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 677 P 679
P
Sbjct: 313 P 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/102 (27%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Frame = +3
Query: 402 AGXLXXPRPXYXIPAPX--PAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPPXXRGXX 575
AG PR P P P P G P PPPP + PP G
Sbjct: 267 AGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGS 326
Query: 576 PXXS-XXCPXRVSRRXXDXPRLXPXAXSSPRRLXXPPXLXPP 698
P + P R+ P P S P PP PP
Sbjct: 327 PPPAGTGSPPPPPRQKRQAPERSPPTGSPP--TGSPPTGRPP 366
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +2
Query: 497 PXXXSAPPTLPTARFXPXASXXPXXXPXXXAXVPXPXXPSXXXPPTSXPXXXLLXAPPXX 676
P S PP P P A P P P S PPT P P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 677 P 679
P
Sbjct: 298 P 298
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 179 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
PP +I + L++ ++ + E E L D + +W D RLS + ++G
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +2
Query: 131 LSLMIDSLLATYDRESPP----DSKIVVNLTLHL-RHANIRESESTVRILADLQMNWIDK 295
+S ++++LL Y++ P + V +L R ++ E + L+M W DK
Sbjct: 29 VSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Query: 296 RLSXNAGEWG 325
+L+ N +WG
Sbjct: 89 KLTWNPTDWG 98
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 420 PRPXYXIPAPXPAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPP 557
P P + +PAP P P + +PPPP P PP
Sbjct: 101 PYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPP 146
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/91 (28%), Positives = 31/91 (34%)
Frame = +3
Query: 426 PXYXIPAPXPAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPPXXRGXXPXXSXXCPXR 605
P P P P+ P + P S PP PP R P S P
Sbjct: 436 PTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTP---KPAPPPPSRIPNPSPSPQ-PAE 491
Query: 606 VSRRXXDXPRLXPXAXSSPRRLXXPPXLXPP 698
VS+ P L P A +P + PP PP
Sbjct: 492 VSKSPPPPPPLPPIA--TPSSVPPPPPPPPP 520
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 179 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
PP +++ + + + L+ ++ E E V L D W D+RL N E+G
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYG 98
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 206 LTLHLRHANIRESESTVRILADLQMNWIDKRLSXNA 313
L +L+ ++E E V ++ +L W D RLS N+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 110 ECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE-SESTVRILADLQMN- 283
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 284 -WIDKRLS 304
W D RLS
Sbjct: 68 IWQDPRLS 75
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 438 IPAPXPAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPPXXRGXXP 578
+P P P+ P+ P RPPPP P PP G P
Sbjct: 263 VPPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP 308
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 438 IPAPXPAXXPLGR*PSSXXXRXHXRPPPPCXXHXSXPXPPXXRGXXP 578
+P P P+ P+ P RPPPP P PP G P
Sbjct: 273 VPPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP 318
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWLVSSGTLV 361
++ E + + + L +W+D RLS N E+G T + G ++
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPGEML 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,287
Number of Sequences: 27780
Number of extensions: 245545
Number of successful extensions: 752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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