Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_F01
(839 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.006
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 3.5
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 8.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.1
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.006
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSXNAGE 319
+D+RL+ G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.0
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 XNAGEWG 325
N E+G
Sbjct: 118 WNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.0
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 XNAGEWG 325
N E+G
Sbjct: 118 WNESEYG 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSXNAGEWG 325
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.5
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLS 304
D RL+
Sbjct: 68 TDPRLA 73
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 8.1
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLS 304
D RL+
Sbjct: 68 TDPRLA 73
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 337 PSAAAPFPCVPTQS 296
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,250
Number of Sequences: 438
Number of extensions: 3295
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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