Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_E17
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 38 0.001
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 31 0.26
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.26
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.2
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 5.5
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.3
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 26 7.3
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 7.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 9.7
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 9.7
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +2
Query: 329 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 508
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 509 GSALSPLLFSLYINDI 556
GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 66 SAYTSRANRRTKPRVTAPSVSS 131
S T R NR T+PRV+APS SS
Sbjct: 45 SGRTRRRNRNTRPRVSAPSSSS 66
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 30.7 bits (66), Expect = 0.26
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 444 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPXSTTRV 620
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 621 GRRRCFIDDFRPQLPP 668
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 453 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPXS 608
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 439 VRQVVSYDEHEPVWHSHV 386
+R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 497 GVPQGSALSPLLFSLYINDI 556
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 5 G*MLAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLY 151
G + ++ +C+ +W E VI + K E Y P S+L GK Y
Sbjct: 161 GKISSLPDCLDVTSWTENGVIMGARHKKYAIEGVQYHPESILSEYGKEY 209
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 628 GVASSTTSDRSYHHGTVVPESGASTLTP--RKSTAGLFKKGSPS 753
G A + +R YHHGT++ S + R + G+ KG S
Sbjct: 155 GSAYKISRNRCYHHGTMLLNSDLEGVREYLRSPSTGILSKGVSS 198
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 402 TGSCSSYETTCRTVRSDIESRERVPGPVTSQ--PESRKAPPSPRYYSV 539
+G S ++ V+S+ R GP S+ P+ PSP +YSV
Sbjct: 2 SGLLPSLSSSFPLVQSEALGMPRTHGPKPSENDPKEPTCSPSPAFYSV 49
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 685 REPLSHGGSCGLKSSMKQRLLPTRVVDXGVIGE 587
RE L+HGGS + + + Q LL R+ +I E
Sbjct: 371 REDLNHGGSHKINNCIGQILLAKRLGKNRIIAE 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,648,672
Number of Sequences: 5004
Number of extensions: 82979
Number of successful extensions: 263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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