Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_E14
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    27   3.2  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.5  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   7.3  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.7  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   9.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 242 VRVHRADTGRSSNEXDRQTTXLERR 316
           +R H+   GR+  E DR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 311 VPXQSFVDPIHLKICQYPHGGL 246
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 5   GFTRDSFNRSVVIKCRRLILFLLPVSPHLCYS 100
           GF RD FN    I C  L+ F   +  + C++
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFT 442


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 40  HKMSTTYIILVTGFSSLVL*LVWQNAKTQHHCPS*STRSSQRTIGSL 180
           HK ++ + I +T   SL+L   W  A    HC + +T SSQ  I ++
Sbjct: 447 HKKNS-FSINMTVHESLLL-FTWSTASFDFHCIANATTSSQLLIANV 491


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 400 TAGDYALRARVSXNGSVSWIKRSDISTPXSMXLDN 504
           +A DYA R      G+  W+KR D++   S  ++N
Sbjct: 350 SALDYAKRLTEYCGGAHIWLKREDLNHGGSHKINN 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,898
Number of Sequences: 5004
Number of extensions: 37819
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)