Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_E09
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.4
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.5
06_03_1381 - 29754405-29754525,29754617-29754671,29755383-297554... 29 3.3
02_04_0382 - 22501041-22501279,22501717-22501810 29 5.8
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 28 7.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 7.7
03_05_0196 + 21849370-21850278,21850424-21851050 28 7.7
02_01_0192 + 1302358-1302781,1303330-1303394,1303794-1303856,130... 28 7.7
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +2
Query: 332 PFXGGGXKKXPXGGGEKXXPPXXXXXXXGGXGXXXXFXXPPPXXXXGGGG 481
P GGG + P GGG PP GG G PP GGGG
Sbjct: 100 PLGGGGAR--PPGGGGGGGPPSLPPGAGGGGG-----ARPPAPGGGGGGG 142
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 110 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 9
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_1381 -
29754405-29754525,29754617-29754671,29755383-29755440,
29755819-29755988,29756576-29756780
Length = 202
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGG 447
GGG G PPPPP GGG
Sbjct: 8 GGGGAGEARGADAPPPPPVAAGGGGG 33
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 440 FXXPPPXXXXGGGGXXXXPPPXXXXXP 520
+ PPP GGGG PPP P
Sbjct: 80 YYDPPPSPYYGGGGGYGKPPPPPPCCP 106
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 448 PPPXXXXXGGGGGXXPPPXXXXXPP 522
PPP GGGG PPP P
Sbjct: 74 PPPTSRRGGGGGAALPPPQAQGVDP 98
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Frame = -1
Query: 498 GGXXXXPPPPXXXXGGGXXNXXXXPXP-------PXXXXXXXGGXXFSPPPXGXFFXPPP 340
GG PPPP GG P P P GG PPP G PP
Sbjct: 1116 GGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPP 1175
>03_05_0196 + 21849370-21850278,21850424-21851050
Length = 511
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +2
Query: 236 KLFLGFXXEXKKGXXKXGGKFFXPKXFXKKKXPFXGGGXKKXPXGGGEKXXP 391
K+F+ ++G G+ F P+ F F G + P G G + P
Sbjct: 397 KVFVNVWKIGREGEYWGDGEIFRPERFENSTVDFRGADFEFIPFGAGRRMCP 448
>02_01_0192 +
1302358-1302781,1303330-1303394,1303794-1303856,
1304224-1304232
Length = 186
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Frame = +2
Query: 320 KKKXPFXGGGXKKXPXGGG-----EKXXPPXXXXXXXGGXGXXXXFXXPPPXXXXGGGGX 484
KK G G K GGG EK P G F P P GGGG
Sbjct: 42 KKARKSKGAGNKGEASGGGGGKGKEKALEPPPAVIRRAPAGSASVFQQPEPGFTPGGGGG 101
Query: 485 XXXP 496
P
Sbjct: 102 GKGP 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,506,687
Number of Sequences: 37544
Number of extensions: 392076
Number of successful extensions: 1688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -