Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_E09
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.56
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.56
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.98
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.98
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.98
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 3.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.2
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 28 9.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 9.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 9.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 9.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 9.1
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGG 447
GGG GGG PPP P GGG
Sbjct: 61 GGGGGCGGGGGCAPPPAPCGGGCGGG 86
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGG 447
G G GGG PPP P GGG
Sbjct: 37 GCGGGCGGGGGCAPPPAPCGGGCGGG 62
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGG 447
GGG GGG PPP P GGG
Sbjct: 61 GGGGGCGGGGGCAPPPAPCGGGCGGG 86
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGG 447
G G GGG PPP P GGG
Sbjct: 37 GCGGGCGGGGGCAPPPAPCGGGCGGG 62
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 480 PPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPP 340
PPPP P PP GG PPP G PPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -1
Query: 480 PPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPP 340
PPPP G P PP G PPP PPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 480 PPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPP 340
PPPP P PP GG PPP G PPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -1
Query: 480 PPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPP 340
PPPP G P PP G PPP PPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 480 PPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPP 340
PPPP P PP GG PPP G PPP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -1
Query: 480 PPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPP 340
PPPP G P PP G PPP PPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 501 GGGXXXXPPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPP 367
G G PPPP GG PP GG PPP
Sbjct: 26 GCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPPP 70
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 502 GGGXXXXPPPPXXXXXGGXXKPXXXAXPPXXXXXXXGGXXFFPPP 368
G G PPPP GG PP GG PPP
Sbjct: 26 GCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPPP 70
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 523 GGXXXXXGGGXXXXPPPPXXXXXGGXXKP 437
GG GGG PPPP GG +P
Sbjct: 198 GGGSGGSGGGSGRFPPPPPPYGGGGRRRP 226
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGGK 444
GGG GGG PPP GGG+
Sbjct: 197 GGGGSGGSGGGSGRFPPPPPPYGGGGR 223
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -1
Query: 501 GGGXXXXPPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPPXKG 331
G G PPPP GG P PP G + PPP PP G
Sbjct: 329 GMGGMPPPPPPGMRYPGGM------PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHG 379
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -1
Query: 501 GGGXXXXPPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSPPPXGXFFXPPPXKG 331
G G PPPP GG P PP G + PPP PP G
Sbjct: 339 GMGGMPPPPPPGMRYPGGM------PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHG 389
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGG 447
G G GGG PPPPP G G
Sbjct: 41 GCGGGGGCGGGCAPPPPPPACGGGCG 66
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 524 GGGXXXXXGGGXXPPPPPXXXXXGGG 447
G G GGG PPPPP G G
Sbjct: 98 GCGGGGGCGGGCAPPPPPPACGGGCG 123
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 416 GGXGXXXXFXXPPPXXXXGGGGXXXXPPPXXXXXP 520
GG G PPP GGGG PP P
Sbjct: 23 GGGGCGCAPPPPPPACGCGGGGGGYAAPPPAYAAP 57
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 498 GGXXXXPPPPXXXXGGGXXNXXXXPXPPXXXXXXXGGXXFSP 373
GG PPPP G G P PP GG F P
Sbjct: 776 GGMHHMPPPPSFRGGRGGHG---GPPPPHFDRRGGGGPPFRP 814
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 448 PPPXXXXXGGGGGXXPPPXXXXXPPP 525
PPP G G PPP PPP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPP 266
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 448 PPPXXXXXGGGGGXXPPPXXXXXPPP 525
PPP G G PPP PPP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPP 287
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 448 PPPXXXXXGGGGGXXPPPXXXXXPPP 525
PPP G G PPP PPP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPP 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,413,675
Number of Sequences: 27780
Number of extensions: 212880
Number of successful extensions: 1112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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