Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_E07
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 36 0.056
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 34 0.17
09_02_0603 - 11150739-11150746,11150791-11151340 33 0.39
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.6
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.7
07_01_0479 + 3606663-3607448 29 4.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 8.5
03_02_0122 - 5742530-5743705 28 8.5
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 35.5 bits (78), Expect = 0.056
Identities = 22/79 (27%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Frame = -3
Query: 620 PXXXXXGGGGGXPXXXXXXKKKXPPXGGGXXGXXXGEXXXXXPPP-XGGXXXXXXXXGXX 444
P GGGGG PP GG G G PPP GG
Sbjct: 72 PPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGG 131
Query: 443 XXXXXXPXXPPPXXXXXFF 387
P PPP +F
Sbjct: 132 GGGGAYPTPPPPNPFLPYF 150
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Frame = -2
Query: 621 PXXPXX-GGGGGXXXXXXXXXKKXTPXXGGGXGXXEXXXXXXXPPPXGGGXKXFXXXXXX 445
P GGGGG P GGG G PPP GGG
Sbjct: 71 PPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQG 130
Query: 444 XXXXXXXPXPPP 409
P PPP
Sbjct: 131 GGGGGAYPTPPP 142
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +2
Query: 476 PPPXGGGXXXXFXXSXXPXPPPXXGVXFFXXXXXXXXXPPPPPXXGXXGXXXPXXPPXXX 655
PPP G F P PPP + PPPPP P PP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPP 609
Query: 656 XFXXXXXXXPP 688
PP
Sbjct: 610 PILPNRSVPPP 620
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/71 (25%), Positives = 18/71 (25%)
Frame = +2
Query: 476 PPPXGGGXXXXFXXSXXPXPPPXXGVXFFXXXXXXXXXPPPPPXXGXXGXXXPXXPPXXX 655
PPP G P PPP PPPPP P PP
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPP 610
Query: 656 XFXXXXXXXPP 688
PP
Sbjct: 611 ILPNRSVPPPP 621
Score = 29.5 bits (63), Expect(2) = 0.39
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 476 PPPXGGGXXXXFXXSXXPXPPPXXGVXFFXXXXXXXXXPPPPP 604
PPP G F P PPP PPPPP
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPP 693
Score = 21.8 bits (44), Expect(2) = 0.39
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +2
Query: 590 PPPPPXXGXXGXXXPXXP 643
PPPPP G P P
Sbjct: 716 PPPPPANRSNGPSAPAPP 733
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +2
Query: 470 FXPPPXGGGXXXXFXXSXXPXPPPXXGVXFFXXXXXXXXXPPPPPXXG 613
F PPP G S P PPP + F PPPPP G
Sbjct: 43 FPPPPPPGSTFVPLPQSGVPPPPP---LGSFFVPPPQSRVPPPPPQLG 87
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +1
Query: 478 PPXGGGXXXXXSPLXXPXXPPPXGGXFFXXXXXXXGXPPP---PPXXXXXGXXPP 633
PP GG P+ P PPP + G PPP PP G PP
Sbjct: 12 PPPQGGFPPQPPPMN-PYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPP 65
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +2
Query: 476 PPPXGGGXXXXFXXSXXPXPPPXXGVXFFXXXXXXXXX--PPPPPXXGXXGXXXPXXPP 646
PPP GG P PPP G PPPPP G G P PP
Sbjct: 1151 PPPVGG-------LGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPP 1202
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 527 PXPPPXXGVXFFXXXXXXXXXPPPPPXXGXXGXXXPXXPP 646
P PPP G+ PPPPP G G P PP
Sbjct: 1110 PPPPPPGGIT---------GVPPPPPIGGLGGHQAPPAPP 1140
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +3
Query: 534 PPPXGGXFFFXXXXXPGXSPPPPXXXXXGXXXXPXXPP 647
PPP G + PG + PPP P PP
Sbjct: 447 PPPPGSSMYNPPPPAPGQATPPPYGVQYAPPPAPIPPP 484
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 526 PXXPPPXGGXFFXXXXXXXGXPPPPPXXXXXGXXPP 633
P PPP G PPPPP G PP
Sbjct: 225 PGGPPPGMRPGMPPPPFRPGMPPPPPGPQQPGQNPP 260
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +2
Query: 476 PPPXGGGXXXXFXXSXXPXPPPXXGVXFFXXXXXXXXXPPPPPXXGXXGXXXPXXPP 646
PPP P PPP G PPPPP G P PP
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPP--PPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Frame = +1
Query: 478 PPXGGGXXXXXSPLXXPXXP----PPXGGXFFXXXXXXXGXPPPPPXXXXXGXXPPXXXP 645
PP G +P P P PP G PPPPP PP P
Sbjct: 309 PPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGP 368
>03_02_0122 - 5742530-5743705
Length = 391
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -2
Query: 603 GGGGGXXXXXXXXXKKXTPXXGGGXGXXEXXXXXXXPPPXGGG 475
GGG G KK + GGG G E P GGG
Sbjct: 286 GGGHGGRYEEDDYKKKPSAHSGGGGGRYEEEEGYKKPSGHGGG 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,523,075
Number of Sequences: 37544
Number of extensions: 467959
Number of successful extensions: 998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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