Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_E01
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 47 3e-06
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 42 1e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 40 3e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 36 0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.036
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.063
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.15
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 31 0.26
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.45
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.78
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.2
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 25 9.6
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.6
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 47.2 bits (107), Expect = 3e-06
Identities = 33/123 (26%), Positives = 38/123 (30%), Gaps = 4/123 (3%)
Frame = +1
Query: 433 PPPXRXXXXRPXXSPGXXXXX--PPXPRPRXXGXXXYHAXXXRRGGXPXGPXXXPPAPXG 606
PPP R +P G PP P PR R P P P+
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 607 RPPXXPXXXXPGXXAAXPPPXSXXATXA-PPXXRXXXPAAXPXPXPP-XPPXPPTXAPXS 780
+PP A PP + A PP + P P PP PP P P S
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434
Query: 781 GXP 789
P
Sbjct: 435 APP 437
Score = 45.2 bits (102), Expect = 1e-05
Identities = 41/125 (32%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Frame = +1
Query: 433 PPPXRXXXXR----PXXSPGXXXXXPPXPRPRXXGXXXY------HAXXXRRGGXPXGPX 582
PPP R P S PP P P G +A P P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422
Query: 583 XXPPAPXGRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXP-PXPPXP 759
P AP PP P G AA P P S A APP PAA P P P PP
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPS--APIAPPLPAGM-PAAPPLPPAAPAPPPA 479
Query: 760 PTXAP 774
P AP
Sbjct: 480 PAPAP 484
Score = 41.5 bits (93), Expect = 1e-04
Identities = 34/129 (26%), Positives = 36/129 (27%), Gaps = 5/129 (3%)
Frame = +1
Query: 433 PPPXRXXXXRPXXSPGXXXXXPPXPRPRXXGXXXYHAXXXRRGGXPXGPXXXPPAPXGRP 612
PPP R P PP P PR P PPA GR
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 613 -PXXPXXXXPGXXAAXP-PPXSXXATXAPPXXRXXXPAAXPX---PXPPXPPXPPTXAPX 777
P P + P P APP P + P PP PP P P
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 778 SGXPPARXP 804
PA P
Sbjct: 460 PAGMPAAPP 468
Score = 35.9 bits (79), Expect = 0.007
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = +2
Query: 611 PPXXXPAAXPGVXPXA--XRPVRXXXPXPXPXXXPXXPPPXPXXXPPXRPXPQHXPPXPG 784
PP P+A P + P A P+ P P P PP P P P P P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP-IAPPLPAGMPAAPPLPPAAPAPPP 478
Query: 785 XPXP 796
P P
Sbjct: 479 APAP 482
Score = 32.7 bits (71), Expect = 0.063
Identities = 30/127 (23%), Positives = 33/127 (25%), Gaps = 3/127 (2%)
Frame = +2
Query: 419 PXXXXPPPXVXXQXXPXXPPXRXXXXPPVPGXGPXG---PXXITXXXXXXXXXXXXPRXX 589
P PP P P R PP P P P ++ P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 590 XRRRXXAPPXXXPAAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPPXRPXPQHX 769
R PP A+ P P P P P PP P P P P
Sbjct: 397 GRSAPALPPLGN-ASRTSTPPVPTPP--SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453
Query: 770 PPXPGXP 790
P P P
Sbjct: 454 PIAPPLP 460
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = +2
Query: 599 RXXAPPXXXPAAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPPXRPXPQHXPPX 778
R PP P + P P + P P P P PP P P P P P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPP---SAPPSLPMGAPAAPP-LPPSAPIAPPLPAGMPAA 466
Query: 779 PGXP 790
P P
Sbjct: 467 PPLP 470
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Frame = +1
Query: 589 PPAPXGRPPXXPXXXXPGXXAAXPPPXSXXA--TXAPPXXRXXXPAAXPXPXP-----PX 747
PP P P P P A PPP + T + P P A P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 748 PPXPP 762
PP PP
Sbjct: 290 PPLPP 294
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +2
Query: 689 PXPXXXPXXPPPXPXXXPPXRPXPQHXPPXPGXPXP 796
P P PP P PP R P P P P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Frame = +1
Query: 658 PPPXSXXATXAPPXXRXXXPAAXPXPXPPXP-------PXPPTXAPXSGXPPAR 798
PPP S PP ++ P P PP P PP PP R
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/69 (31%), Positives = 27/69 (39%)
Frame = +1
Query: 568 PXGPXXXPPAPXGRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPX 747
P P PP+P PP P ++ PPP A P P+A P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKA--PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKV 201
Query: 748 PPXPPTXAP 774
PP P + AP
Sbjct: 202 PPPPLSQAP 210
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +2
Query: 629 AAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPPXRPXPQHXPPXPGXPXP 796
+A P P P P P PPP P P P P PP P P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAP---PIPSKAPPIPSSLPP 173
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 614 PXXXPAAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPPX-RPXPQHXPPXP 781
P PA+ P + P P+ P P P PP P P P PP P
Sbjct: 150 PPPSPASAPPI-PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 28.7 bits (61), Expect = 1.0
Identities = 22/81 (27%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = +1
Query: 568 PXGPXXXPPAPXGRPPXX--PXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXP 741
P P P RPP P P A PP + APP P A P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP---SKAPPIPSSLPPPAQPAAPV 181
Query: 742 PXPPXPPTXAPXSGXPPARXP 804
PP P+ P + P
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVP 202
Score = 27.5 bits (58), Expect = 2.4
Identities = 25/80 (31%), Positives = 28/80 (35%)
Frame = +1
Query: 559 GGXPXGPXXXPPAPXGRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPX 738
GG P + PP P P + PP T APP R P P
Sbjct: 107 GGMPKLRHIGKSSASAAPPSAPAPPTP--QSELRPP-----TSAPP--RPSIPPPSPASA 157
Query: 739 PPXPPXPPTXAPXSGXPPAR 798
PP P P P S PPA+
Sbjct: 158 PPIPSKAP-PIPSSLPPPAQ 176
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/76 (23%), Positives = 23/76 (30%)
Frame = +1
Query: 577 PXXXPPAPXGRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPX 756
P P P + P P + PP + APP P P P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPAS----APPIPSKAPPIPSSLPPPAQPAA 179
Query: 757 PPTXAPXSGXPPARXP 804
P P + P+ P
Sbjct: 180 PVKSPPSAPSLPSAVP 195
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 40.3 bits (90), Expect = 3e-04
Identities = 33/132 (25%), Positives = 39/132 (29%), Gaps = 2/132 (1%)
Frame = +1
Query: 415 AXAGXXPPPXRXXXXRPXXSPGXXXXXPPXPRPRXXGXXXYHAXXXRRGGXPXGPXXXPP 594
A +G P P P P PP P P + P G P
Sbjct: 1087 APSGIPPVPKPSVAAPPVPKPSVAV--PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144
Query: 595 APXGRPPXXPXXXXPGXX--AAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTX 768
PP P + PP ++ PP + PAA P PP PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK---PAAGVPPVPPPSEAPPVP 1201
Query: 769 APXSGXPPARXP 804
P G PP P
Sbjct: 1202 KPSVGVPPVPPP 1213
Score = 35.1 bits (77), Expect = 0.012
Identities = 35/120 (29%), Positives = 36/120 (30%), Gaps = 6/120 (5%)
Frame = +1
Query: 463 PXXSPGXXXXXPPXPRPRXXGXXXYHAXXXRRGGXPX-GPXXXPPAPXGRPPXXPXXXXP 639
P S G PP P P + G P P PP P P P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSE----IPSIPAPSGAPPVPAPSGIPPVPK---PSVAAPPVP 1105
Query: 640 GXXAAXPP-PXSXXATXAPPXXRXXXPAAXPXPXPPXP----PXPPTXAPXSGXPPARXP 804
A PP P A P P P PP P PP AP SG PP P
Sbjct: 1106 KPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP-SGAPPVPKP 1164
Score = 33.1 bits (72), Expect = 0.048
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Frame = +1
Query: 577 PXXXPPA--PXGRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXP 750
P PP P P P P A PP ++ APP P+A P P
Sbjct: 982 PTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPP---VPLPSADAPPIPVPS 1038
Query: 751 PXPPTXAPXSGXP 789
PP P S P
Sbjct: 1039 TAPPVPIPTSTPP 1051
Score = 31.9 bits (69), Expect = 0.11
Identities = 31/129 (24%), Positives = 36/129 (27%), Gaps = 1/129 (0%)
Frame = +1
Query: 421 AGXXPPPXRXXXXRPXXSPGXXXXXPPXPRPRXXGXXXYHAXXXRRGGXPXGPXXXPPAP 600
+G P P P +P PP P+P G P P P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGA---PPVPKPSVAAPPV----PAPSSGIPPVPKPAAGVP 1189
Query: 601 XGRPPXX-PXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTXAPX 777
PP P P PP S A P P P P P P + AP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPS 1248
Query: 778 SGXPPARXP 804
P + P
Sbjct: 1249 VSTPRSSVP 1257
Score = 31.5 bits (68), Expect = 0.15
Identities = 33/131 (25%), Positives = 36/131 (27%), Gaps = 1/131 (0%)
Frame = +1
Query: 415 AXAGXXPPPXRXXXXRPXXSPGXXXXXPPXPRPRXXGXXXYHAXXXRRGGXPXGPXXXPP 594
A +G P P P P PP P+P G P P
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGA---PPVPKPSVAAPPV-----PAPSGAPPVPKPSVA 1167
Query: 595 APXGRPPXXPXXXXPGXXAAXPP-PXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTXA 771
AP P P A PP P A P P P PP P P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT-PSAGL 1226
Query: 772 PXSGXPPARXP 804
P P A+ P
Sbjct: 1227 PPVPVPTAKAP 1237
Score = 29.5 bits (63), Expect = 0.59
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +2
Query: 611 PPXXXPAAXPGVXPXAXRPVR-XXXPXPXPXXXPXXPP-PXPXXXPPXRPXPQHXPPXP 781
PP P + P P + P P P PP P P P P P PP P
Sbjct: 986 PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVP 1044
Score = 29.1 bits (62), Expect = 0.78
Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = +1
Query: 577 PXXXPPAPXGRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPX 756
P P+ P P P PP ++ AP + P P P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 757 -PPTXAPXSGXPPARXP 804
PP AP SG PP P
Sbjct: 1082 APPVPAP-SGIPPVPKP 1097
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +2
Query: 608 APPXXXPAAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPPXRPXPQHXPPXP 781
APP P + P V + P P P P P PP P P PP P
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAP-SSEIPSIPAPSGAPPV-PAPSGIPPVP 1095
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 35.9 bits (79), Expect = 0.007
Identities = 21/70 (30%), Positives = 24/70 (34%)
Frame = +1
Query: 589 PPAPXGRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTX 768
P P PP P P +A PP + PP P P P PP P +
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP---SAPPMPAGPPSAPPPPLPASS 1739
Query: 769 APXSGXPPAR 798
AP P R
Sbjct: 1740 APSVPNPGDR 1749
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.036
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +1
Query: 658 PPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTXAPXSGXPPARXP 804
PPP T AP PA P P PP PP +G PP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 354 PPXGXPPPPPXXGQXXGXGXPNXXXXPPXXPPGG 253
P G PPPPP G G P PP GG
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 626 PAAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPPXRPXPQHXPP 775
P P V P P P P PPP P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 0.59
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 683 PXPXPXXXPXXPPPXPXXXPPXRPXPQHXPPXPGXP 790
P P P P P P PP P PP P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 29.1 bits (62), Expect = 0.78
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Frame = +1
Query: 610 PPXXPXXXXPGXXAAX-PPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTXAPXS 780
PP P P A P P PP A P PP PP P A S
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +1
Query: 691 PPXXRXXXPAAXPXPXPPXPPXPPTXAPXSGXPP 792
PP P P P P PP P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = +1
Query: 661 PPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTXAPXSGXPPARXP 804
PP A P P P P PP PP +G P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +2
Query: 638 PGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPPXRPXPQHXPPXPGXP 790
P P P P P P P P P PP PP P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +1
Query: 589 PPAPX-GRPPXXPXXXXPGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXP 741
PPAP G PP P PPP A A R PA P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA-GGSRYYAPAPQAEPEP 803
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.063
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 695 PXXXPXXPPPXPXXXPPXRPXPQHXPPXPG 784
P P PPP P PP +P P PP PG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP---PPPPG 31
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 718 AAXPXPXPPXPPXPPTXAPXSGXPPARXP 804
A+ P PP PP PP P S PP P
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 354 PPXGXPPPPPXXGQXXGXGXPNXXXXPPXXPPG 256
PP PPPPP G P+ PP PPG
Sbjct: 5 PPGNPPPPPP----PPGFEPPS--QPPPPPPPG 31
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +1
Query: 715 PAAXPXPXPPXPPXPPTXAPXSGXPP 792
P P P PP P P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.5 bits (68), Expect = 0.15
Identities = 20/56 (35%), Positives = 20/56 (35%)
Frame = -1
Query: 780 GXGGXCWGXGRXGGXXXGXGGGXXGXXXGXGXGXXXRTGRXAXGXTPGXAAGXXXG 613
G GG G G G G GGG G G G R GR G G G G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGG--ARGGRGGRGGARGGRGGSSGG 63
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = -1
Query: 795 GXGXPGXGGXCWGXGRXGGXXXGXGGGXXGXXXGXGXGXXXRTG-RXAXGXTPGXAAGXX 619
G G GG G G GG G GG G G G R G R G + G G
Sbjct: 12 GGSRGGRGGFNGGRGGFGG---GRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Query: 618 XG 613
G
Sbjct: 69 GG 70
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +2
Query: 593 RRRXXAPPXXXPAAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPP 724
RRR APP A A P R P P P PPP
Sbjct: 3 RRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPP 46
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.9 bits (64), Expect = 0.45
Identities = 23/66 (34%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Frame = +1
Query: 589 PPAPXGRPPXXPXXXXPGXXAAXPPPX-SXXATXAPPXXRXXXPA-AXPXPXPPXPPXPP 762
PP P PP P A P S +P P A P P PP PP PP
Sbjct: 189 PPPP---PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPP-PPPPP 244
Query: 763 TXAPXS 780
T P S
Sbjct: 245 TLPPQS 250
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.1 bits (62), Expect = 0.78
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 718 AAXPXPXPPXPPX--PPTXAPXSGXPPARXP 804
AA P P P P PP+ AP S PPA P
Sbjct: 1880 AAPPPPPPMALPKAGPPSAAPTSALPPAGPP 1910
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 689 PXPXXXPXXPPPXPXXXPPXRPXPQHXPPXPGXPXP 796
P P PP P P P P PP P P P
Sbjct: 113 PVPEEPLPGEPPLPDEPVPEEPLPGE-PPLPNEPVP 147
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 3.2
Identities = 24/106 (22%), Positives = 24/106 (22%), Gaps = 7/106 (6%)
Frame = +1
Query: 496 PPXPRPRXXGXXXYHAXXXRRGGXPXGPXXXPPAPXGRPPXXPXXXXPGXXAAXPPPXSX 675
PP P G G P P P P PG PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267
Query: 676 XATXAPPXXRXXXPAAXPXPXP-------PXPPXPPTXAPXSGXPP 792
PP P P P PP P P PP
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313
Score = 27.1 bits (57), Expect = 3.2
Identities = 24/106 (22%), Positives = 24/106 (22%), Gaps = 7/106 (6%)
Frame = +1
Query: 496 PPXPRPRXXGXXXYHAXXXRRGGXPXGPXXXPPAPXGRPPXXPXXXXPGXXAAXPPPXSX 675
PP P G G P P P P PG PP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 293
Query: 676 XATXAPPXXRXXXPAAXPXPXP-------PXPPXPPTXAPXSGXPP 792
PP P P P PP P P PP
Sbjct: 294 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -2
Query: 653 AAXXPGXXXXGXXGGRPXGA-GGXXXGP 573
A PG G GG P GA GG GP
Sbjct: 611 AGGAPGGAPGGMPGGAPGGAPGGADNGP 638
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Frame = +1
Query: 592 PAPXGRPPXX-PXXXXPGXXA---AXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXP 759
P P RP P PG + A PPP S T PP A P P
Sbjct: 71 PYPPARPTSQRPNSWQPGNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSYAPPPSGR 130
Query: 760 P 762
P
Sbjct: 131 P 131
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = +1
Query: 661 PPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTXAPXSGXPPARXP 804
PP A AP P P P PP P + PP P
Sbjct: 140 PPLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQPPFPPP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,831
Number of Sequences: 5004
Number of extensions: 26036
Number of successful extensions: 385
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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