Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_E01
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.47 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +1

Query: 637 PGXXAAXPPPXSXXATXAPPXXRXXXPAAXPXPXPPXPPXPPTXAP 774
           P   A  P P    +  AP       P+  P P  P P  PP+  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +1

Query: 715 PAAXPXPXPPXPPXPPTXAPXSGXPPARXP 804
           P A     PP P   P      G PP++ P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/45 (26%), Positives = 12/45 (26%)
 Frame = +2

Query: 611 PPXXXPAAXPGVXPXAXRPVRXXXPXPXPXXXPXXPPPXPXXXPP 745
           P    P   P        P R   P P     P  PP  P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 378 PPXXXRXTPPXGXPPPPP 325
           PP   +  PP G P  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
 Frame = +2

Query: 683 PXPXPXXXPXXP----PPXPXXXPPXRPXPQHXP 772
           P P P   P  P    PP P   PP    P   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 357 TPPXGXPPPPP 325
           TPP   PPPPP
Sbjct: 337 TPPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 339  PPPPPXXGQ 313
            PPPPP  GQ
Sbjct: 1358 PPPPPSSGQ 1366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,972
Number of Sequences: 438
Number of extensions: 5783
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)