Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_D18
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 31 1.4
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z93386-2|CAB07647.1| 387|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 28 7.4
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 28 7.4
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.4
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.4
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 127 TVPHDRLAPXQRTSGSLP-PYSKIVVNLTLHLRHANIRESESTGRILADLQMNVDRQTTE 303
T+P++ L P QR GSLP + + + +L L A R + RI +Q D++ +
Sbjct: 371 TIPNEFLPPEQRILGSLPLTFVRPPMRKSLFLSGA--RSGKRCDRI--KMQRKKDKKEVK 426
Query: 304 LERRANGAAELGLVSSER 357
LE++ +E L S E+
Sbjct: 427 LEKKLEKKSEDSLESVEK 444
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical protein
T26A5.5a protein.
Length = 1076
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 373 RQASTSVPRTPAQVLQPHSPCVPTQSFVDPHSFED 269
R +S P TP V S +P S ++ HS ED
Sbjct: 961 RNSSIDTPYTPTTVTPSRSSWLPNTSSINRHSIED 995
>Z93386-2|CAB07647.1| 387|Caenorhabditis elegans Hypothetical
protein R11H6.3 protein.
Length = 387
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 70 RXSSLDAIASAAEC*KRNITVPHDRLAPXQRTSGSLPPYSKIVVNLTLHLRHANIRESES 249
R SS +S A + VP+ P ++ SGS P I + +L+H +IR ++
Sbjct: 88 RNSSASVTSSPARSTTNRLAVPNP---PLRKRSGSAPSIKLITLASIWNLKHEHIRALKT 144
Query: 250 T 252
T
Sbjct: 145 T 145
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/84 (27%), Positives = 34/84 (40%)
Frame = +1
Query: 136 HDRLAPXQRTSGSLPPYSKIVVNLTLHLRHANIRESESTGRILADLQMNVDRQTTELERR 315
++ L R LP KI + L L + N+ E E L M D + + R
Sbjct: 49 YNSLVQPVRNRSELPMIVKIGMQLVLLI---NVDEKEQVMHTNVWLTMKWDDFQLKWDPR 105
Query: 316 ANGAAELGLVSSERLWRPDVVLLN 387
V+ E++W PD+VL N
Sbjct: 106 DYANITQIRVAPEKVWLPDIVLFN 129
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 456 G*SAWTXSLPSTMQGDIGPTTCRLXXYXXGAXXPH 560
G +WT S P + DI TTC L Y A PH
Sbjct: 696 GLGSWTQSWPKS---DIEHTTCLLAQYPENASVPH 727
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 456 G*SAWTXSLPSTMQGDIGPTTCRLXXYXXGAXXPH 560
G +WT S P + DI TTC L Y A PH
Sbjct: 696 GLGSWTQSWPKS---DIEHTTCLLAQYPENASVPH 727
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 456 G*SAWTXSLPSTMQGDIGPTTCRLXXYXXGAXXPH 560
G +WT S P + DI TTC L Y A PH
Sbjct: 696 GLGSWTQSWPKS---DIEHTTCLLAQYPENASVPH 727
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 456 G*SAWTXSLPSTMQGDIGPTTCRLXXYXXGAXXPH 560
G +WT S P + DI TTC L Y A PH
Sbjct: 696 GLGSWTQSWPKS---DIEHTTCLLAQYPENASVPH 727
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/84 (27%), Positives = 34/84 (40%)
Frame = +1
Query: 136 HDRLAPXQRTSGSLPPYSKIVVNLTLHLRHANIRESESTGRILADLQMNVDRQTTELERR 315
++ L R LP KI + L L + N+ E E L M D + + R
Sbjct: 49 YNSLVQPVRNRSELPMIVKIGMQLVLLI---NVDEKEQVMHTNVWLTMKWDDFQLKWDPR 105
Query: 316 ANGAAELGLVSSERLWRPDVVLLN 387
V+ E++W PD+VL N
Sbjct: 106 DYANITQIRVAPEKVWLPDIVLFN 129
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/84 (27%), Positives = 34/84 (40%)
Frame = +1
Query: 136 HDRLAPXQRTSGSLPPYSKIVVNLTLHLRHANIRESESTGRILADLQMNVDRQTTELERR 315
++ L R LP KI + L L + N+ E E L M D + + R
Sbjct: 49 YNSLVQPVRNRSELPMIVKIGMQLVLLI---NVDEKEQVMHTNVWLTMKWDDFQLKWDPR 105
Query: 316 ANGAAELGLVSSERLWRPDVVLLN 387
V+ E++W PD+VL N
Sbjct: 106 DYANITQIRVAPEKVWLPDIVLFN 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,639
Number of Sequences: 27780
Number of extensions: 266784
Number of successful extensions: 685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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