Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_D18
(854 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 29 0.055
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 28 0.095
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 28 0.095
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 28 0.095
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.29
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.38
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.89
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.1
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.7
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 2.7
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 4.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 8.3
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 8.3
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 29.1 bits (62), Expect = 0.055
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 322 GAAELGLVSSERLWRPDVVLLN 387
G E+ V S+ +WRPD+VL N
Sbjct: 94 GGVEMLHVPSDHIWRPDIVLYN 115
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 28.3 bits (60), Expect = 0.095
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 307 ERRANGAAELGLVSSERLWRPDVVLLN 387
E + G ++ V S+ +WRPD+VL N
Sbjct: 93 EPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 28.3 bits (60), Expect = 0.095
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 307 ERRANGAAELGLVSSERLWRPDVVLLN 387
E + G ++ V S+ +WRPD+VL N
Sbjct: 93 EPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 28.3 bits (60), Expect = 0.095
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 322 GAAELGLVSSERLWRPDVVLLN 387
G E+ V SE +W PD+VL N
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYN 124
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLLN-AGXTTAGDYALRARVSNN 441
+ RLW+PDV++ N A G Y V NN
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNN 133
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 322 GAAELGLVSSERLWRPDVVLLN 387
G EL V SE +W PD+VL N
Sbjct: 91 GVTEL-YVPSEHIWLPDIVLYN 111
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 343 VSSERLWRPDVVLLN 387
V SE +W PD+VL N
Sbjct: 97 VPSEHIWLPDIVLYN 111
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 352 ERLWRPDVVLLNAGXTTAGDYALR 423
+++W+PD+VL N G+Y +R
Sbjct: 106 DKVWKPDIVLFN---NADGNYEVR 126
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLLN-AGXTTAGDYALRARVSNN 441
++ +LW+PD+++ N A G Y V++N
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHN 164
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLLN-AGXTTAGDYALRARVSNN 441
++ +LW+PD+++ N A G Y V++N
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHN 164
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLLN-AGXTTAGDYALRARVSNN 441
++ +LW+PD+++ N A G Y V++N
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHN 96
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.4 bits (48), Expect = 2.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAGXTT 402
V S+ +W PD+ + N+G T
Sbjct: 119 VKSDDIWVPDISVYNSGDMT 138
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 23.4 bits (48), Expect = 2.7
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -2
Query: 301 QSFVDPHSFED 269
+S+VDPH++ED
Sbjct: 606 RSYVDPHTYED 616
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 343 VSSERLWRPDVVLLN 387
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNA 390
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNA 390
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNA 390
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNA 390
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNA 390
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 334 LGLVSSERLWRPDVVLLN 387
L + ER+WRPD N
Sbjct: 109 LSIKMLERIWRPDTYFYN 126
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +3
Query: 555 PHXSPQRXXGNDPPXXRXXXXPG 623
PH SPQ PP PG
Sbjct: 27 PHQSPQAPQRGSPPNPSQGPPPG 49
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.8 bits (44), Expect = 8.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +2
Query: 272 FK*MWIDKRLSWNAGR 319
F+ W+D+RL++ G+
Sbjct: 57 FRQSWVDRRLAFQGGK 72
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 476 ITPIXXAGRHWPNDXQTXXVPVRGXDXXXVTP 571
+TP GR WP D P+ D ++P
Sbjct: 911 VTP-RSPGRAWPGDSDIRQRPIPRSDDIRLSP 941
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,189
Number of Sequences: 438
Number of extensions: 3086
Number of successful extensions: 48
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -