Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_D14
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.26 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.2  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    27   4.2  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   7.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.7  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 219 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 320
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 143 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 45
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 297 FPCVPTQSFVDPIHLKICQYPHGGL 223
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 801 GFXXGGGGXAAPGAXXXGXPGGTRGP 724
           G   G    AAPGA     PGG  GP
Sbjct: 616 GGMPGAAPGAAPGAAPGAAPGGDNGP 641


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 798 FXXGGGGXAAPGAXXXGXPGGTRGPA 721
           +  GG    APG    G PGG  G A
Sbjct: 609 YQAGGAPGGAPGGMPGGAPGGAPGGA 634


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 725 GPRVPPGXPXXXAPGAAXPPPP 790
           GP  PP  P     G   PPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 737 PPGXPXXXAPGAAXPPPPXXNP 802
           PP  P     GA  PPPP   P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 737 PPGXPXXXAPGAAXPPPP 790
           PP  P   AP AA P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = +1

Query: 268 DKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN---AAATTAGDYALRARVSNNGSVSWIK 438
           +K+L+     +    WL+S +R W   + +++     A    +  L  ++ +   + + K
Sbjct: 415 EKKLAKRVKNYRLKDWLISRQRFWGTPIPMVHCETCGAVPVPESELPVKLPDLDKI-YEK 473

Query: 439 RLDISTPISMQLDXWPNDMQTCTFKFGSRMHNSDEMDFVIDKRXY 573
               ++P+S  L+ W     TC    G     +D MD  +D   Y
Sbjct: 474 G---TSPLS-NLETWMK--TTCPKCHGPATRETDTMDTFVDSSWY 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,470
Number of Sequences: 5004
Number of extensions: 56258
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)