Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_D13
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   4.3  
07_03_1142 + 24287674-24288357,24291451-24292137                       28   9.9  
05_01_0493 + 4113869-4116728,4116859-4117370                           28   9.9  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    28   9.9  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
 Frame = -1

Query: 786 ARRPRXXXPGPXPPXGXGXPEXXXXPXG--XGGPXTKXTXPPRRDPAXTXSVXXAAXRXV 613
           A RP    PGP PP G         P     GGP  +   P ++ P    +   A     
Sbjct: 360 APRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFKKSPGAAAAAAQADPNKA 419

Query: 612 RXAP 601
           +  P
Sbjct: 420 KLKP 423


>07_03_1142 + 24287674-24288357,24291451-24292137
          Length = 456

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 795 RXXARRPRXXXPGPXPPXG 739
           R   RRPR   PGP PP G
Sbjct: 219 RSRPRRPRPNIPGPPPPKG 237


>05_01_0493 + 4113869-4116728,4116859-4117370
          Length = 1123

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 155 SSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILAD-LQMNWIDKRLSWNAGRMGL 331
           +S R  G+LPP      NLT    H N    E   R+  D L + ++D  LS N    G+
Sbjct: 493 ASNRLAGALPPEMSGCRNLTFVDLHDNAISGELPPRLFRDWLSLQYLD--LSDNVIAGGI 550

Query: 332 QHLAGVLGTLVE 367
               G+L +L +
Sbjct: 551 PPEIGMLTSLTK 562


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 298 FVDPIHLKICQYPHGGLGLTNVSMSQMQGQVDYDFGVRGETPDRTLRGASRS*GTVMLRF 119
           ++  +H    + P G  G+ N+S+  +    D +    G +PD  L G   +   ++ R 
Sbjct: 6   YLQSLHFNCIRLPDGA-GVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 118 RILPH 104
            I PH
Sbjct: 65  EIYPH 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,002,763
Number of Sequences: 37544
Number of extensions: 361100
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)