Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_D13
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.18
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.24
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 33 0.31
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 33 0.31
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.42
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.42
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 31 0.73
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.96
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 31 0.96
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.96
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 31 0.96
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 31 0.96
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 31 1.3
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 30 1.7
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 30 1.7
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 30 2.2
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 2.9
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.9
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 29 2.9
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 29 3.9
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 29 3.9
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 29 3.9
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 29 3.9
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 29 3.9
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 29 5.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.1
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.1
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 5.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.1
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 29 5.1
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 29 5.1
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.1
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 6.8
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 28 6.8
Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 8.9
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 28 8.9
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 8.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 8.9
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 28 8.9
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 8.9
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 28 8.9
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 28 8.9
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 28 8.9
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 28 8.9
AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical ... 28 8.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 8.9
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 8.9
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 209 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 316
L +L+ ++E E V ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGRM-GLQHL 340
PP +I + L++ ++ + E E L D + +W D RLSW+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 218 HLRHANIRESESTVRILADLQMNWIDKRLSWNA 316
+L+ + E E V ++ +L W D RLSWNA
Sbjct: 81 NLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNA 113
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGRM-GLQHL 340
PP +++ + + + L+ ++ E E V L D W D+RL WN G+ H+
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYGGISHI 103
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 200 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 313
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 200 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 313
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 31.5 bits (68), Expect = 0.73
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 218 HLRHANIRESESTVRILADLQMNWIDKRLSWNA 316
+L+ ++E + + ++ ++ W D RLSWNA
Sbjct: 80 YLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 209 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 313
L +L+ ++E V ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 182 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRM-GLQH 337
PP ++ ++ + L H I E +++L + W D LSW G++H
Sbjct: 86 PPDGRVDISHNIELVHIIGINELNQNMQVLVYIVQQWTDASLSWKVEEFRGIKH 139
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNA---GRMGLQHLAG 346
++ E + + + L +W+D RLSWN G + L H G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPG 84
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 170 IGSLPPX----SKIVVNLT-LHLRHANIRESESTVRILADLQMNWIDKRLSWN 313
I S+PP + +N L+H + E + I L+++W D RL WN
Sbjct: 47 IASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWHDDRLMWN 99
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 693 GPPXXWAPXXFXGXXPPXGXXGPGXXXGASGP 788
GPP P G P G GPG G +GP
Sbjct: 162 GPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGP 193
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = -3
Query: 787 GPEAPXXXPGPXXPXGGXXPXXXXGAQXXGGPXNXXNXXXPPXP 656
GP P PGP G P G + G PP P
Sbjct: 141 GPPGPAGPPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGP 184
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 348 SSERLWRPDVVLLNAAATT-AGDYALGARVSNNGSV 452
+S +LWRPDV+L N+ + + Y+ VS+NG V
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 692 GPPXPLGXXXXSGXPXPXGGSG-PGXXXRG 778
GP P G G P P GG G PG RG
Sbjct: 147 GPAGPAGGPGPKGPPGPPGGHGEPGPAGRG 176
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 693 GPPXXWAPXXFXGXXPPXGXXGPGXXXGASGP 788
GPP P G P G GPG G +GP
Sbjct: 164 GPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGP 195
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = -3
Query: 787 GPEAPXXXPGPXXPXGGXXPXXXXGAQXXGGPXNXXNXXXPPXP 656
GP P PGP G P G + G PP P
Sbjct: 143 GPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGP 186
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = -3
Query: 787 GPEAPXXXPGPXXPXGGXXPXXXXGA---QXXGGPXNXXNXXXPP 662
GP P PGP P G P GA Q GP PP
Sbjct: 144 GPPGPPGPPGPLGPRGDKGPSGPRGALGDQGETGPVGEIGDQGPP 188
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
S P + + L L L ++ E + + L+ WID++LSW+ G
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
S P + + L L L ++ E + + L+ WID++LSW+ G
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 692 GPPXPLGXXXXSGXPXPXGGSGP 760
GPP P+G G P P G GP
Sbjct: 240 GPPGPIGEMGPPGPPGPRGEPGP 262
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
S P + + L L L ++ E + + L+ WID++LSW+ G
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 692 GPPXPLGXXXXSGXPXPXGGSGP 760
GPP P+G G P P G GP
Sbjct: 240 GPPGPIGEMGPPGPPGPRGEPGP 262
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -3
Query: 787 GPEAPXXXPGPXXPXGGXXPXXXXGAQXXGGPXNXXNXXXPPXP 656
GP P PG G P GA GP PP P
Sbjct: 227 GPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGP 270
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 656 GSRRGGXVXXVXGPPXPLGXXXXSGXPXPXGGSG-PGXXXRG 778
GS G GPP P G G P GG G PG +G
Sbjct: 174 GSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 221 LRHANIRESESTVRILADLQMNWIDKRLSWNA 316
L+ + E V ++ ++ W D RLSWNA
Sbjct: 81 LKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 275 LQMNWIDKRLSWNAGRMG 328
L+M W D RL W+ GR G
Sbjct: 77 LEMQWFDYRLMWDPGRWG 94
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 656 GSRRGGXVXXVXGPPXPLGXXXXSGXPXPXGGSG-PGXXXRG 778
GS G GPP P G G P GG G PG +G
Sbjct: 174 GSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -3
Query: 787 GPEAPXXXPGPXXPXGGXXPXXXXGAQXXGGPXNXXNXXXPPXP 656
GP P PG G P GA GP PP P
Sbjct: 222 GPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGP 265
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 348 SSERLWRPDVVLLNAAA 398
SS+ +W+PDV+L N+AA
Sbjct: 105 SSDHIWKPDVLLYNSAA 121
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 656 GSRRGGXVXXVXGPPXPLGXXXXSGXPXPXGGSG-PGXXXRG 778
GS G GPP P G G P GG G PG +G
Sbjct: 174 GSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -3
Query: 787 GPEAPXXXPGPXXPXGGXXPXXXXGAQXXGGPXNXXNXXXPPXP 656
GP P PG G P GA GP PP P
Sbjct: 222 GPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGP 265
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 656 GSRRGGXVXXVXGPPXPLGXXXXSGXPXPXGGSG-PGXXXRG 778
GS G GPP P G G P GG G PG +G
Sbjct: 174 GSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 191 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGRMGLQHL 340
+K+V ++ + + I E V++ ++W D +SW+ + GL L
Sbjct: 83 TKVVRVESVRINNVEIDERRQNVKVFGRFVLSWNDTMVSWDKEQWGLSWL 132
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 152 RSSQRTIGSLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSW 310
R + T+ S P +VV+L + L+ N+ E E + + A L+ W D+ L W
Sbjct: 35 REERPTLDSSKP---VVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLRW 85
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 215 LHLRHAN-IRESESTVRILADLQMNWIDKRLSWN 313
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 203 VNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLSWNAGRMGLQHL 340
VN+ L + H + E E T + + WID+ + W+A + + L
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDAKKENVTKL 100
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 209 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 313
L L+ + E + V ++ ++ W D RL+WN
Sbjct: 78 LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = -3
Query: 763 PGPXXPXGGXXPXXXXGAQXXGGPXN-XXNXXXPPXPR 653
PGP P G P G + GGP PP PR
Sbjct: 216 PGPTGPPGPRGPPGETGDEGEGGPDGIPMEKKSPPGPR 253
>Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical
protein C40C9.2 protein.
Length = 534
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 197 IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
+VV++ ++L+ ++ E + ++A ++ W D +L W+ G
Sbjct: 53 LVVSVKIYLQQILDVDEKNQVITLVAWIEYQWTDYKLKWDPSEYG 97
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 692 GPPXPLGXXXXSGXPXPXGGSGP 760
GPP P G G P P G +GP
Sbjct: 167 GPPGPNGHPGQPGRPGPAGPAGP 189
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 781 EAPXXXPGPXXPXGGXXPXXXXGAQ-XXGGPXNXXNXXXPPXP 656
+ P PGP P G P G+ G P N N P P
Sbjct: 155 DCPAGPPGPAGPAGPKGPNGNPGSDGQPGAPGNNGNAGGPGAP 197
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 653 AGSRRGGXVXXVXGPPXPLGXXXXSGXPXPXGGSG 757
AGS G GPP P G G P GG G
Sbjct: 188 AGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPG 222
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 781 EAPXXXPGPXXPXGGXXPXXXXGAQ-XXGGPXNXXNXXXPPXP 656
+ P PGP P G P G+ G P N N P P
Sbjct: 156 DCPAGPPGPAGPAGPKGPNGNSGSDGQPGAPGNNGNAGGPGAP 198
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 781 EAPXXXPGPXXPXGGXXPXXXXGAQ-XXGGPXNXXNXXXPPXP 656
+ P PGP P G P G+ G P N N P P
Sbjct: 218 DCPAGPPGPAGPAGPKGPNGNSGSDGQPGAPGNNGNAGGPGAP 260
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -3
Query: 787 GPEAPXXXPGPXXPXGGXXPXXXXGAQXXGGPXNXXNXXXPP 662
GP P G G P GAQ GGP N P
Sbjct: 285 GPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAP 326
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 781 EAPXXXPGPXXPXGGXXPXXXXGAQ-XXGGPXNXXNXXXPPXP 656
+ P PGP P G P G+ G P N N P P
Sbjct: 155 DCPAGPPGPAGPAGPKGPNGNSGSDGQPGAPGNNGNAGGPGAP 197
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 781 EAPXXXPGPXXPXGGXXPXXXXGAQ-XXGGPXNXXNXXXPPXP 656
+ P PGP P G P G+ G P N N P P
Sbjct: 155 DCPAGPPGPAGPAGPKGPNGNSGSDGQPGAPGNNGNAGGPGAP 197
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 781 EAPXXXPGPXXPXGGXXPXXXXGAQ-XXGGPXNXXNXXXPPXP 656
+ P PGP P G P G+ G P N N P P
Sbjct: 156 DCPAGPPGPAGPAGPKGPNGNSGSDGQPGAPGNNGNAGGPGAP 198
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 781 EAPXXXPGPXXPXGGXXPXXXXGAQ-XXGGPXNXXNXXXPPXP 656
+ P PGP P G P G+ G P N N P P
Sbjct: 156 DCPAGPPGPAGPAGPKGPNGNSGSDGQPGAPGNNGNAGGPGAP 198
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -1
Query: 786 ARRPRXXXPGPXPPXGXGXPEXXXXPXGXGGPXTKXTXPP 667
A RP P P PP G P P G ++ PP
Sbjct: 61 ASRPPPVLPPPLPPTSSGPPAASSRPFDDWGGASEVAAPP 100
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -1
Query: 786 ARRPRXXXPGPXPPXGXGXPEXXXXPXGXGGPXTKXTXPP 667
A RP P P PP G P P G ++ PP
Sbjct: 61 ASRPPPVLPPPLPPTSSGPPAASSRPFDDWGGASEVAAPP 100
>AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical
protein Y37A1B.2a protein.
Length = 164
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -1
Query: 786 ARRPRXXXPGPXPPXGXGXPEXXXXPXGXGGPXTKXTXPP 667
A RP P P PP G P P G ++ PP
Sbjct: 61 ASRPPPVLPPPLPPTSSGPPAASSRPFDDWGGASEVAAPP 100
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 656 GSRRGGXVXXVXGPPXPLGXXXXSGXPXPXGGSG-PG 763
G+ GG GPP P G G P P G G PG
Sbjct: 271 GAPGGGYGVGPPGPPGPSGRPGAPGQPGPDGQPGAPG 307
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 668 GGXVXXVXGPPXPLGXXXXSGXPXPXGGSGPGXXXRG 778
G + GPP P G +G P G +GP G
Sbjct: 160 GNCITCPAGPPGPPGPDGNAGPAGPAGAAGPDGEGAG 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,202
Number of Sequences: 27780
Number of extensions: 283553
Number of successful extensions: 2310
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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