Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_D13
(801 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 31 0.012
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.029
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 30 0.029
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 30 0.029
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.15
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.20
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 26 0.35
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.35
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 26 0.47
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 3.3
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.8
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.012
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
+ RLW+PDV++ N+A G Y V NNG+ + G
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPG 142
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.9 bits (64), Expect = 0.029
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V++NGS + G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPG 105
Score = 25.0 bits (52), Expect = 0.82
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.9 bits (64), Expect = 0.029
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V++NGS + G
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPG 173
Score = 25.4 bits (53), Expect = 0.62
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +2
Query: 146 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGRM 325
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 326 G 328
G
Sbjct: 124 G 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.9 bits (64), Expect = 0.029
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V++NGS + G
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPG 173
Score = 25.4 bits (53), Expect = 0.62
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +2
Query: 146 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGRM 325
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 326 G 328
G
Sbjct: 124 G 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V+++GS + G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPG 105
Score = 25.0 bits (52), Expect = 0.82
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V+++GS + G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPG 105
Score = 25.0 bits (52), Expect = 0.82
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V+++GS + G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPG 105
Score = 25.0 bits (52), Expect = 0.82
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V+++GS + G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPG 105
Score = 25.0 bits (52), Expect = 0.82
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTAGDYALGARVSNNGSVSXIKRG 470
++ +LW+PD+++ N+A G Y V+++GS + G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPG 105
Score = 25.0 bits (52), Expect = 0.82
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 327 GCSTWLVSSERLWRPDVVLLNAA 395
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA 395
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA 395
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA 395
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.20
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 321 EWGCSTWL-VSSERLWRPDVVLLNAA 395
E+G T L V SE +W PD+VL N A
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA 113
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.35
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAAATTAGDYALGAR--VSNNGSVSXIKRG 470
V R+WRPD +L N A + VS+ G V + G
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHG 125
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.35
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 327 GCSTWLVSSERLWRPDVVLLNAA 395
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 25.8 bits (54), Expect = 0.47
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 203 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 316
++ L ++H N+ E TV L++ W L+W +
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.2 bits (50), Expect = 1.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 354 ERLWRPDVVLLNAA 395
+++W+PD+VL N A
Sbjct: 106 DKVWKPDIVLFNNA 119
Score = 22.2 bits (45), Expect = 5.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 194 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGRMG 328
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.0 bits (47), Expect = 3.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 236 IRESESTVRILADLQMNWIDKRLSWNAGR 322
I E + T + + +W+D+RL++ G+
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGK 72
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 354 ERLWRPDVVLLN 389
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,609
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 36
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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