Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_D06
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    30   0.46 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    28   1.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    27   4.3  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.7  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = +3

Query: 222 GRSYNTSRDRVDE------SYKKTYRNE-SSVNYSNREYGGRGGSPERKRMRME 362
           GR+Y +SR R D+       Y++ YR+E SS  Y + +   R  SP R+R R E
Sbjct: 16  GRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQ--RRDYSPARRRDRYE 67


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 204 TRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSP 338
           ++  SG   +NT R   D+S+    +  S VN+S R+ G R  SP
Sbjct: 674 SKEKSGSMFFNTLRTVKDKSHVHDTQRSSDVNFS-RQNGTRSHSP 717


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 147 NCLDCYC-LYKNLCIRYFYHHCSSLVHNN 64
           N L C+  L  N CI Y Y  CSSL   N
Sbjct: 718 NFLRCFASLLHNCCIFYAYRACSSLFGEN 746


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +3

Query: 243 RDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEGPAERRXXXXXXXXXXXXXX 422
           R R +   +++  +   ++Y++R Y  R   P+R + R E  +ERR              
Sbjct: 291 RSRDNNLSRESSVSSKHLDYNSRNYNKRDRDPDRTKYR-EYHSERRKQHRTDRYSDDYYQ 349

Query: 423 XRQENYGGERRSFGGDE--RRRSPARESYR 506
            R  +Y  ++RS   D    R +P R SYR
Sbjct: 350 GRSYSY--KKRSHRSDRYTERENPDR-SYR 376


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +3

Query: 228 SYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPE 341
           S N+++   + +  + Y N ++ NY+N     +GG+ +
Sbjct: 605 SGNSNKQNYNNNNNQNYGNNNNQNYNNNNNSSQGGNSQ 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,576
Number of Sequences: 5004
Number of extensions: 38219
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)