Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_D06
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    31   1.3  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 135 CYCLYKNLCIRYFYHHCSSLVHNNHD 58
           C+C  KN C +Y+ H+C +L H   D
Sbjct: 533 CFCRNKN-CFKYYCHNCWALDHGKDD 557


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/104 (25%), Positives = 39/104 (37%)
 Frame = +3

Query: 219 GGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEGPAERRXXXXXX 398
           GGR  +   ++  E  +K +R   +    +RE   +G   E K  R   PA         
Sbjct: 280 GGRFVDKPSEK--EEQEKFFRGSDAGGGEDRE-PEKGRKQEHKESRDRRPARGDSGEVEK 336

Query: 399 XXXXXXXXXRQENYGGERRSFGGDERRRSPARESYRKPSGMGPP 530
                    R E    ERRS G +ERR     + +R+  G   P
Sbjct: 337 RGRGEKAEGRDEQ---ERRSHGSEERRGGSEEQPHREERGPQKP 377


>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 282 FDMFFCKIHLLCHDWCCNSFHRYYN 208
           +  F   + + C ++CCN+   YYN
Sbjct: 180 YGQFDAVVTIFCVEYCCNTLSEYYN 204


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 222 HRYYNEYHYCMMNSLRH-HHGLHGFHNCLDCYCLYKNLCIRYFYHHCSSLVHNNH 61
           H ++ E+H+   +   H HHG HG H+       + +    +  HH    VH+ H
Sbjct: 561 HGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGH 615


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 262 LTKKHIEMKALLTI--QTESMEVEEDHQKEKE*GWRDQPKDVAMTAAAVITAGPTAQGRK 435
           +T K  E K +L    Q +  + E ++ K ++ G+ ++ +++  + +A I A   A    
Sbjct: 125 MTIKDYERKLVLEKGGQIDESDEEAEYNKTQQRGYYEEQEEIRKSLSAAINADDGADDDL 184

Query: 436 ITEAKGGPSVGMNEDD 483
           +TE K       +ED+
Sbjct: 185 LTERKKTSKEQEDEDE 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,195
Number of Sequences: 27780
Number of extensions: 238035
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)